当前解析结果
SmilChr06G002845| 统一新 Gene ID | SmilChr06G002845 |
|---|---|
| 名称 | SmilChr06G002845 |
| 描述 | uncharacterized SmilChr06G002845 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41214791 - 41217523 / + |
| NCBI Gene ID | LOC130989590 |
|---|---|
| GeneID | 130989590 |
| locus_tag | - |
| NCBI Name | LOC130989590 |
| 原始查询 | SmilChr06G002845 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0307900; species=rice; confidence=low |
| 产物 | hit=Os02g0307900; species=rice; confidence=low |
| Arabidopsis | AT1G51172 (AT1G51172)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:3767434] identity=26.7; qcov=0.446; evalue=1.2e-13; confidence=low |
| Rice | Os02g0307900- identity=28.1; qcov=0.469; evalue=1.71e-18; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989590 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769553.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057769553.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769553.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769553.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769553.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41215117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr6:41215138 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C18 |
Chr6:41215138 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C18 |
Chr6:41215156 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B9,C49 |
Chr6:41215156 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B9,C49 |
Chr6:41215162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:41215163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B22 |
Chr6:41215166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr6:41215167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:41215173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:41215182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:41215230 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | C15,C18,C31,C49,C61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。