Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002854

染色体: Chr06 坐标: 41305916-41307699 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002854
名称SmilChr06G002854
描述ethylene-responsive transcription factor ERN1-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向41305916 - 41307699 / +

ID 对照

NCBI Gene IDLOC130989600
GeneID130989600
locus_tag-
NCBI NameLOC130989600
原始查询SmilChr06G002854

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ethylene-responsive transcription factor ERN1-like
产物ethylene-responsive transcription factor ERN1-like
ArabidopsisAT5G19790 (RAP2.11)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832099]
identity=73.5; qcov=0.211; evalue=1.15e-32; confidence=weak
RiceOs12g0582900 (OsERF#004)
-
identity=36.5; qcov=0.883; evalue=8.47e-59; confidence=medium
GOGO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
PfamPF00847 (AP2)
InterPro-
eggNOG-
NRGeneID:130989600

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769576.1
2 Chromosome 染色体 0.00000 XP_057769576.1
3 Centromere 着丝粒 0.00000 XP_057769576.1
4 Chromatin 染色质 0.00000 XP_057769576.1
5 Telomere 端粒 0.00000 XP_057769576.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:41306083 C CA 1bp_insertion frameshift_variant 73 A1,A10,A11,A15,A4,A5,A7,B104,B110,B112,B113,B125,B126,B127,B130,B135,B139,B140,B23,B24,B30,B33,B37,B38,B39,B44,B45,B49,B51,B53,B56,B58,B61,B62,B63,B64,B68,B76,B79,B80,B82,B87,B9,B91,B96,C12,C14,C18,C19,C22,C24,C27,C29,C32,C35,C38,C41,C44,C47,C48,C55,C6,C60,C68,C70,C77,C78,C8,C82,D3,D4,D8,D9
Chr6:41306107 G A EMS_canonical_SNV CDS_variant 1 B2
Chr6:41306201 G A EMS_canonical_SNV CDS_variant 3 B22,C15,C25
Chr6:41306207 G A EMS_canonical_SNV CDS_variant 1 C70
Chr6:41306419 C T EMS_canonical_SNV CDS_variant 3 B50,C47,C7
Chr6:41306458 G A EMS_canonical_SNV CDS_variant 1 C55
Chr6:41306540 C T EMS_canonical_SNV CDS_variant 3 A8,B13,C87
Chr6:41306551 C T EMS_canonical_SNV CDS_variant 3 C47,C7,C82
Chr6:41306552 G A EMS_canonical_SNV CDS_variant 4 B22,B30,C15,C25
Chr6:41306575 C T EMS_canonical_SNV CDS_variant 1 B9
Chr6:41306638 C T EMS_canonical_SNV CDS_variant 1 A13
Chr6:41306662 G A EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057769576.1
394 aa
N
1
197
394
AP2
C
PF00847 AP2 69-118 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769576.1 Pfam PF00847 AP2 Domain 69 118 1.7e-15 57.8 AP2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057913593.1
TCTCTAAAAAACTAACAAAACTGTAGCAATAAAAAAAATGAAAAAAATAAGAAAAAACTTAGACCATTTCAACTCTACAGTCTCTCATATTTTGCATATAAAACCAACCATTTCTCACATCAAATGACAAAAATCACTAAACTCTCACACTCCAAAATCAACTACTCCAAAAAGAAACAAATGGCAAGAAAGAGAAAGGCTTGTGATTTTGTAGATGATGAAGAAAAACTCAACCCCAGAGAGAAAAACCTATCGCCCAA...

CDS

1 records

下载 CDS FASTA
LOC130989600
ATGACAAAAATCACTAAACTCTCACACTCCAAAATCAACTACTCCAAAAAGAAACAAATGGCAAGAAAGAGAAAGGCTTGTGATTTTGTAGATGATGAAGAAAAACTCAACCCCAGAGAGAAAAACCTATCGCCCAAGTGGGACGAGATGGTGAAGGAGGCAGCCGCCGCGGCGGCGGTGGGCGGCATCAGGCGGGCCCGCAAGCGGTTCGTGGGAGTCCGCCAACGCCCCTCGGGGCGCTGGGTGGCGGAGATAAAGGA...

Protein

1 records

下载 Protein FASTA
XP_057769576.1
MTKITKLSHSKINYSKKKQMARKRKACDFVDDEEKLNPREKNLSPKWDEMVKEAAAAAAVGGIRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPTNSNSSSTPALSSKITNLLLSRIKARNSALITANYITTLHPSSSVSLTPPVSQEHAATGDTGEIPDFSESSFTDFLNDPDENYTIENNMIDHKYSSFDSFATQADEKSDETEVDDEMMVMMEPVDFQFVDEIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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