当前解析结果
SmilChr06G002860| 统一新 Gene ID | SmilChr06G002860 |
|---|---|
| 名称 | SmilChr06G002860 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41439775 - 41450021 / - |
| NCBI Gene ID | LOC130989605 |
|---|---|
| GeneID | 130989605 |
| locus_tag | - |
| NCBI Name | LOC130989605 |
| 原始查询 | SmilChr06G002860 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.1; qcov=1.03; evalue=1.82e-72; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=25.9; qcov=1.02; evalue=2.45e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989605 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769601.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769601.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769601.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769601.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769601.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41440174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:41440366 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | B1,B34,B36,B48,B7,C15,C36 |
Chr6:41440394 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B34 |
Chr6:41440394 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B34 |
Chr6:41440537 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B123,B133,C65 |
Chr6:41440537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B133,C65 |
Chr6:41440543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B133,C65 |
Chr6:41440556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B133,C65 |
Chr6:41440581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B123,B133,C35,C65 |
Chr6:41440618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,C35,C65,C85 |
Chr6:41440642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr6:41440707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769601.1PF18052
Rx_N 5-91 aa
PF00931
NB-ARC 165-320 aa
PF23559
WHD_DRP 411-479 aa
PF23598
LRR_14 535-819 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769601.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 91 | 1e-11 | 45.5 | Rx N-terminal domain |
XP_057769601.1 |
Pfam | PF00931 |
NB-ARC | Domain | 165 | 320 | 2.3e-35 | 122.5 | NB-ARC domain |
XP_057769601.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 411 | 479 | 4.7e-15 | 56.1 | Disease resistance protein Winged helix domain |
XP_057769601.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 535 | 819 | 1.8e-14 | 54.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。