Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002877

染色体: Chr06 坐标: 41585470-41587903 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002877
名称SmilChr06G002877
描述probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向41585470 - 41587903 / +

ID 对照

NCBI Gene IDLOC130989633
GeneID130989633
locus_tag-
NCBI NameLOC130989633
原始查询SmilChr06G002877

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
产物probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
ArabidopsisAT5G39410 (AT5G39410)
Saccharopine dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:833937]
identity=70; qcov=0.987; evalue=0; confidence=high
RiceOs07g0597100
-
identity=66.1; qcov=0.478; evalue=1.26e-103; confidence=medium
GOGO:0005739 (mitochondrion); GO:0005811 (lipid droplet); GO:0005886 (plasma membrane); GO:0009247 (glycolipid biosynthetic process)
KEGG-
PfamPF03435 (Sacchrp_dh_NADP)
InterPro-
eggNOG-
NRGeneID:130989633

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.60000 XP_057769645.1
2 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057769645.1
3 Chloroplast membrane 叶绿体膜 0.20000 XP_057769645.1
4 Peroxisome 过氧化物酶体 0.20000 XP_057769645.1
5 Nucleus 细胞核 0.00000 XP_057769645.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:41585649 GA G 1bp_deletion frameshift_variant 1 B37
Chr6:41585649 GA G 1bp_deletion CDS_variant 1 B37
Chr6:41585670 C T EMS_canonical_SNV CDS_variant 5 B103,B22,B73,B83,C59
Chr6:41585796 G A EMS_canonical_SNV CDS_variant 1 A1
Chr6:41586117 G A EMS_canonical_SNV CDS_variant 3 B113,B54,B71
Chr6:41586246 C T EMS_canonical_SNV CDS_variant 2 B47,C49
Chr6:41587139 C T EMS_canonical_SNV CDS_variant 1 B106
Chr6:41587241 C T EMS_canonical_SNV CDS_variant 1 B106
Chr6:41587301 G A EMS_canonical_SNV CDS_variant 1 A1
Chr6:41587485 G A EMS_canonical_SNV CDS_variant 5 B107,B93,C41,C48,D2
Chr6:41587489 G A EMS_canonical_SNV CDS_variant 1 C40
Chr6:41587523 G A EMS_canonical_SNV CDS_variant 1 B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057769645.1
456 aa
N
1
228
456
Sacchrp_dh_NADP
C
PF03435 Sacchrp_dh_NADP 16-149 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769645.1 Pfam PF03435 Sacchrp_dh_NADP Family 16 149 6.5e-09 36.9 Saccharopine dehydrogenase NADP binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057913662.1
ATTATCCATAAATAGATGAAATAATAAAGCACTGAATATTAGATCACACTCCGTTGTATCATCCATTTCGGCACCCATCACGCATTTCACACACTCACACACAAATAAAAAGCCGAGAAAAGATTTAAGAAACTTCGCCTGCAATCTCTGAAAATGACGGAAATTAATTCCGGCGGCCGGAGCTCCAAAGCCTACGACGTCGTAATCTTCGGCGCCTCCGGTTTCACCGGAAAATACGTAATCCGAGAAGCCCTCAAATT...

CDS

1 records

下载 CDS FASTA
LOC130989633
ATGACGGAAATTAATTCCGGCGGCCGGAGCTCCAAAGCCTACGACGTCGTAATCTTCGGCGCCTCCGGTTTCACCGGAAAATACGTAATCCGAGAAGCCCTCAAATTCCTCAACGCTCCCAACTCTCCCCTCAAATCCCTGGCCTTGGCGGGCCGAAGCCCGTCGCGGCTGTCGGAGGCCCTCACGTGGGCCTCCGCCCCGAACCCGCCGCCCCAGATCCCGCTCCTGACCGCCGACACTTCGGACGGGGAGTCGCTCGC...

Protein

1 records

下载 Protein FASTA
XP_057769645.1
MTEINSGGRSSKAYDVVIFGASGFTGKYVIREALKFLNAPNSPLKSLALAGRSPSRLSEALTWASAPNPPPQIPLLTADTSDGESLARLASQARIILDCVGPFRLYGQPVVAACVDSGCDYLDICGEPDFMERMEASYHDTAVENGSLVISACGFDSVPAEIGLLFHSKQWAGPSAPNRVEAYLSLESDKRIVGNFGTYESAVLGVANADKLVELRRSRPRRARPAIPGPAPPKGSIIEHEKQLGLWALRLPSADSVVVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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