当前解析结果
SmilChr06G002884| 统一新 Gene ID | SmilChr06G002884 |
|---|---|
| 名称 | SmilChr06G002884 |
| 描述 | probable ubiquitin conjugation factor E4 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41645405 - 41650950 / - |
| NCBI Gene ID | LOC130989616 |
|---|---|
| GeneID | 130989616 |
| locus_tag | - |
| NCBI Name | LOC130989616 |
| 原始查询 | SmilChr06G002884 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable ubiquitin conjugation factor E4 |
| 产物 | probable ubiquitin conjugation factor E4 |
| Arabidopsis | AT5G15400 (AT5G15400)U-box domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831392] identity=73.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0427900 (OsPUB1)- identity=64.1; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030433 (GO:0030433); GO:0034450 (ubiquitin-ubiquitin ligase activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04564 (U-box); PF10408 (Ufd2P_core) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989616 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769616.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057769616.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057769616.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057769616.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769616.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41645823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C8 |
Chr6:41645835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B62,B93,C3 |
Chr6:41646088 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr6:41646097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B3,B70,C62 |
Chr6:41647084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B28,C53,D5 |
Chr6:41647117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C47,C7 |
Chr6:41647792 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C14 |
Chr6:41647792 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C14 |
Chr6:41647974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr6:41648140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr6:41648236 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,A21,B13 |
Chr6:41648275 |
AC |
A |
1bp_deletion | frameshift_variant | 86 | A10,A2,A20,A5,A9,B1,B109,B11,B111,B112,B117,B118,B120,B126,B128,B129,B131,B136,B139,B21,B27,B29,B30,B31,B34,B36,B38,B39,B40,B43,B45,B49,B50,B51,B55,B57,B58,B59,B6,B63,B65,B69,B7,B76,B93,B97,B98,B99,C1,C14,C15,C19,C2,C21,C26,C29,C30,C31,C33,C35,C37,C38,C4,C41,C43,C44,C48,C52,C64,C65,C66,C68,C7,C71,C72,C75,C76,C79,C8,C80,C81,C84,D3,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769616.1PF10408
Ufd2P_core 255-919 aa
PF04564
U-box 937-1008 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769616.1 |
Pfam | PF10408 |
Ufd2P_core | Repeat | 255 | 919 | 2.2e-200 | 668.0 | Ubiquitin elongating factor core |
XP_057769616.1 |
Pfam | PF04564 |
U-box | Domain | 937 | 1008 | 2.3e-30 | 105.3 | U-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。