当前解析结果
SmilChr06G002913| 统一新 Gene ID | SmilChr06G002913 |
|---|---|
| 名称 | SmilChr06G002913 |
| 描述 | sister chromatid cohesion protein SCC2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41979835 - 41996589 / + |
| NCBI Gene ID | LOC130989615 |
|---|---|
| GeneID | 130989615 |
| locus_tag | - |
| NCBI Name | LOC130989615 |
| 原始查询 | SmilChr06G002913 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sister chromatid cohesion protein SCC2 |
| 产物 | sister chromatid cohesion protein SCC2 |
| Arabidopsis | AT5G15540 (EMB2773)PHD finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:831407] identity=61; qcov=0.954; evalue=0; confidence=high |
| Rice | Os07g0110400- identity=56.6; qcov=0.577; evalue=0; confidence=medium |
| GO | GO:0003682 (chromatin binding); GO:0010468 (regulation of gene expression); GO:0034087 (establishment of mitotic sister chromatid cohesion); GO:0061780 (GO:0061780); GO:0071169 (establishment of protein localization to chromatin); GO:0090694 (Scc2-Scc4 cohesin loading complex); GO:1990414 (replication-born double-strand break repair via sister chromatid exchange) |
| KEGG | - |
| Pfam | PF12765 (Cohesin_HEAT); PF12830 (Nipped-B_C); PF20168 (PDS5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989615 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769611.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057769614.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057769611.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769613.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769613.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41980051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,A3 |
Chr6:41983591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:41983602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr6:41987597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B47,D1 |
Chr6:41987729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr6:41988448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr6:41989302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B47,D1 |
Chr6:41990061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr6:41990193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:41990660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr6:41992875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B9,C38 |
Chr6:41992930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769611.1PF20168
PDS5 834-977 aa
PF12765
Cohesin_HEAT 854-895 aa
PF12830
Nipped-B_C 1348-1545 aa
XP_057769612.1PF20168
PDS5 800-943 aa
PF12765
Cohesin_HEAT 820-861 aa
PF12830
Nipped-B_C 1314-1511 aa
XP_057769613.1PF20168
PDS5 722-865 aa
PF12765
Cohesin_HEAT 742-783 aa
PF12830
Nipped-B_C 1236-1433 aa
XP_057769614.1PF20168
PDS5 713-856 aa
PF12765
Cohesin_HEAT 733-774 aa
PF12830
Nipped-B_C 1227-1424 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769611.1 |
Pfam | PF20168 |
PDS5 | Repeat | 834 | 977 | 6.3e-08 | 31.6 | Sister chromatid cohesion protein PDS5 protein |
XP_057769611.1 |
Pfam | PF12765 |
Cohesin_HEAT | Repeat | 854 | 895 | 9e-14 | 52.3 | HEAT repeat associated with sister chromatid cohesion |
XP_057769611.1 |
Pfam | PF12830 |
Nipped-B_C | Repeat | 1348 | 1545 | 4.9e-48 | 164.4 | Sister chromatid cohesion C-terminus |
XP_057769612.1 |
Pfam | PF20168 |
PDS5 | Repeat | 800 | 943 | 6e-08 | 31.7 | Sister chromatid cohesion protein PDS5 protein |
XP_057769612.1 |
Pfam | PF12765 |
Cohesin_HEAT | Repeat | 820 | 861 | 8.3e-14 | 52.4 | HEAT repeat associated with sister chromatid cohesion |
XP_057769612.1 |
Pfam | PF12830 |
Nipped-B_C | Repeat | 1314 | 1511 | 4.6e-48 | 164.4 | Sister chromatid cohesion C-terminus |
XP_057769613.1 |
Pfam | PF20168 |
PDS5 | Repeat | 722 | 865 | 5.5e-08 | 31.8 | Sister chromatid cohesion protein PDS5 protein |
XP_057769613.1 |
Pfam | PF12765 |
Cohesin_HEAT | Repeat | 742 | 783 | 6.8e-14 | 52.7 | HEAT repeat associated with sister chromatid cohesion |
XP_057769613.1 |
Pfam | PF12830 |
Nipped-B_C | Repeat | 1236 | 1433 | 6e-48 | 164.1 | Sister chromatid cohesion C-terminus |
XP_057769614.1 |
Pfam | PF20168 |
PDS5 | Repeat | 713 | 856 | 5.4e-08 | 31.9 | Sister chromatid cohesion protein PDS5 protein |
XP_057769614.1 |
Pfam | PF12765 |
Cohesin_HEAT | Repeat | 733 | 774 | 6.6e-14 | 52.7 | HEAT repeat associated with sister chromatid cohesion |
XP_057769614.1 |
Pfam | PF12830 |
Nipped-B_C | Repeat | 1227 | 1424 | 5.9e-48 | 164.1 | Sister chromatid cohesion C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。