当前解析结果
SmilChr06G002916| 统一新 Gene ID | SmilChr06G002916 |
|---|---|
| 名称 | SmilChr06G002916 |
| 描述 | uncharacterized SmilChr06G002916 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42010485 - 42012784 / - |
| NCBI Gene ID | LOC130989645 |
|---|---|
| GeneID | 130989645 |
| locus_tag | - |
| NCBI Name | LOC130989645 |
| 原始查询 | SmilChr06G002916 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826985]; symbol=AT4G13530; hit=AT4G13530; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826985]; symbol=AT4G13530; hit=AT4G13530; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G13530 (AT4G13530)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826985] identity=39.6; qcov=0.914; evalue=9.02e-47; confidence=medium |
| Rice | Os02g0558500- identity=42.3; qcov=0.308; evalue=3.97e-22; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF20705 (DUF6821) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989645 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057769664.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057769664.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057769664.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057769664.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057769664.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42010882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C13 |
Chr6:42010885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,C31,C42,D4 |
Chr6:42010915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,B81 |
Chr6:42010936 |
G |
A |
EMS_canonical_SNV | stop_gained | 22 | A1,B105,B117,B125,B15,B19,B42,B43,B45,B55,B61,B67,B84,B91,C13,C21,C23,C28,C47,C53,C54,C60 |
Chr6:42011796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr6:42011830 |
TTC |
T |
2bp_deletion | frameshift_variant | 107 | A1,A10,A13,A16,A18,A2,A21,A4,A6,A8,A9,B10,B105,B109,B112,B119,B12,B120,B121,B122,B125,B132,B134,B136,B139,B14,B15,B19,B21,B23,B27,B28,B33,B34,B35,B36,B37,B38,B42,B43,B45,B47,B5,B50,B52,B53,B55,B57,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B74,B75,B78,B83,B84,B85,B86,B9,B90,B91,B94,B95,B99,C10,C11,C13,C14,C16,C17,C19,C21,C22,C23,C27,C28,C3,C35,C4,C47,C5,C54,C55,C59,C6,C60,C63,C67,C69,C73,C75,C77,C81,C82,C86,C87,D1,D10,D5,D6 |
Chr6:42011885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B62 |
Chr6:42011904 |
C |
T |
EMS_canonical_SNV | stop_gained | 29 | A1,A16,B105,B12,B121,B125,B131,B136,B15,B19,B42,B43,B45,B55,B60,B61,B67,B79,B84,B91,C13,C21,C23,C28,C47,C53,C54,C60,C87 |
Chr6:42011967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B124,B15,C5,C74,D9 |
Chr6:42011973 |
GC |
G |
1bp_deletion | frameshift_variant | 21 | A1,A16,B105,B12,B125,B131,B15,B19,B42,B43,B45,B55,B79,B91,C13,C21,C28,C53,C54,C60,C87 |
Chr6:42011988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr6:42011996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B124,C20,C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769664.1PF20705
DUF6821 161-299 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769664.1 |
Pfam | PF20705 |
DUF6821 | Family | 161 | 299 | 2.6e-11 | 44.4 | Family of unknown function (DUF6821) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。