Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002925`

染色体: Chr06 坐标: 42093662-42102926 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002925`
名称	SmilChr06G002925
描述	alpha-amylase 3, chloroplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	42093662 - 42102926 / `-`

ID 对照

NCBI Gene ID	`LOC130989666`
GeneID	`130989666`
locus_tag	`-`
NCBI Name	`LOC130989666`
原始查询	`SmilChr06G002925`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-amylase 3, chloroplastic-like
产物	alpha-amylase 3%2C chloroplastic-like
Arabidopsis	`AT1G69830` (AMY3) alpha-amylase-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:843319] identity=60.2; qcov=0.417; evalue=2.01e-170; confidence=low
Rice	`Os01g0715400` (OsSTA30) - identity=60.5; qcov=0.409; evalue=1.56e-173; confidence=low
GO	GO:0004556 (alpha-amylase activity); GO:0005509 (calcium ion binding); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00128 (Alpha-amylase); PF07821 (Alpha-amyl_C2)
InterPro	-
eggNOG	-
NR	GeneID:130989666

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057769688.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057769688.1`
3	Cytoplasm	细胞质	0.20000	`XP_057769690.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057769688.1`
5	Cytosol	细胞质基质	0.20000	`XP_057769690.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:42093851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr6:42093934`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A8,C13
`Chr6:42095415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr6:42096802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B52,C77
`Chr6:42099958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr6:42100176`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B140
`Chr6:42100176`	`AC`	`A`	1bp_deletion	CDS_variant	1	B140
`Chr6:42100660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:42100867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B55,B63,B83,C21,C54
`Chr6:42101023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr6:42101193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B25,B48,B58,C27,C56
`Chr6:42101277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B16,C18,C35,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769688.1

977 aa

488

977

Alpha-amylase

Alpha-amyl_C2

PF00128 Alpha-amylase 613-675 aa PF07821 Alpha-amyl_C2 914-974 aa

XP_057769690.1

922 aa

461

922

Alpha-amylase

Alpha-amyl_C2

PF00128 Alpha-amylase 558-620 aa PF07821 Alpha-amyl_C2 859-919 aa

XP_057769691.1

977 aa

488

977

Alpha-amylase

Alpha-amyl_C2

PF00128 Alpha-amylase 613-675 aa PF07821 Alpha-amyl_C2 914-974 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769688.1`	Pfam	`PF00128`	Alpha-amylase	Domain	613	675	2.7e-10	40.8	Alpha amylase, catalytic domain
`XP_057769688.1`	Pfam	`PF07821`	Alpha-amyl_C2	Domain	914	974	5.7e-15	56.1	Alpha-amylase C-terminal beta-sheet domain
`XP_057769690.1`	Pfam	`PF00128`	Alpha-amylase	Domain	558	620	1.9e-10	41.3	Alpha amylase, catalytic domain
`XP_057769690.1`	Pfam	`PF07821`	Alpha-amyl_C2	Domain	859	919	5.1e-15	56.3	Alpha-amylase C-terminal beta-sheet domain
`XP_057769691.1`	Pfam	`PF00128`	Alpha-amylase	Domain	613	675	2.7e-10	40.8	Alpha amylase, catalytic domain
`XP_057769691.1`	Pfam	`PF07821`	Alpha-amyl_C2	Domain	914	974	5.7e-15	56.1	Alpha-amylase C-terminal beta-sheet domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913708.1
AAGTCGAGAAGGGGCAGTGAGGTCTTTTCACACGAAATTCAACTTTGTCGAGAACAAGATCAACTTCCGGTCCCACTCGCGCAGGCTCTGCTTATCAGAAAGCGCAGAGCCTTTTTCAGTTTTCCCTCCCCGCCATTTGTCTGCTTCTCCTTCTCCACTTTTTCGACTCACAATCACTCATTCCATGCATTTCGCAGCGTTATAAAGTGGCGTAAGAGCTGCTGTTTTCCATTCATTAATGAACTGAAGCTCTTCTGTAT...

XM_057913705.1
ATTCAACTTTGTCGAGAACAAGATCAACTTCCGGTCCCACTCGCGCAGGCTCTGCTTATCAGAAAGCGCAGAGCCTTTTTCAGTTTTCCCTCCCCGCCATTTGTCTGCTTCTCCTTCTCCACTTTTTCGACTCACAATCACTCATTCCATGCATTTCGCAGCGTTATAAAGTGGCGTAAGAGCTGCTGTTTTCCATTCATTAATGAACTGAAGCTCTTCTGTATCTTCTCTTCAAATCAGAAATATGAGTGCAGCTACGC...

CDS

3 records

下载 CDS FASTA

LOC130989666
ATGAGTGCAGCTACGCTGCCTGATGCTGCCGTGTTTAGTACTTTCTTATGCAACCGGCATGTTTTGTGCGGCGCGCAATATCGCCGCGGTTTCCGTTTCGAGCTCAAACGGCAGCCAGTTATTGGAAGAAGATTTCATGACAAAAGGAGAAAACTATTAGATGCGAATGTTTGGCTCCATAGATCAAGATCTGTTGTTTGTTCAAGTACGAGTGATTCTGGAGAGATTCAACCAACTTTTATTGATGAGGAGAATAGCAA...

Protein

3 records

下载 Protein FASTA

XP_057769688.1
MSAATLPDAAVFSTFLCNRHVLCGAQYRRGFRFELKRQPVIGRRFHDKRRKLLDANVWLHRSRSVVCSSTSDSGEIQPTFIDEENSNISESSEFQQTHEDELLATQIALADARAREQEFEKERGILLEKLAQAKAKQHEYEAAIMHEKELVIAELEAAKDLFHKKLQESVDEKFDLESKLILAKQDAVKLAVQVEKLAEIAFQQATSHILEDTKLRVSAAETSAADATYQIEEQIRSATEGTILSMVDQSKSAIAKALAV...

XP_057769690.1
MRMFGSIDQDLLFVQSDSGEIQPTFIDEENSNISESSEFQQTHEDELLATQIALADARAREQEFEKERGILLEKLAQAKAKQHEYEAAIMHEKELVIAELEAAKDLFHKKLQESVDEKFDLESKLILAKQDAVKLAVQVEKLAEIAFQQATSHILEDTKLRVSAAETSAADATYQIEEQIRSATEGTILSMVDQSKSAIAKALAVAKAADDRAKKYAAAPADDSKLIDEISSIKFQNVKLQQQMYDLESQLLVSENELNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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