Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002926`

染色体: Chr06 坐标: 42110378-42125123 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002926`
名称	SmilChr06G002926
描述	uncharacterized SmilChr06G002926
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	42110378 - 42125123 / `-`

ID 对照

NCBI Gene ID	`LOC130989667`
GeneID	`130989667`
locus_tag	`-`
NCBI Name	`LOC130989667`
原始查询	`SmilChr06G002926`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsSTA30; symbol=OsSTA30; hit=Os01g0715400; species=rice; confidence=weak
产物	OsSTA30; symbol=OsSTA30; hit=Os01g0715400; species=rice; confidence=weak
Arabidopsis	`AT1G69830` (AMY3) alpha-amylase-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:843319] identity=63.6; qcov=0.298; evalue=6.74e-111; confidence=weak
Rice	`Os01g0715400` (OsSTA30) - identity=66.4; qcov=0.291; evalue=7.45e-116; confidence=weak
GO	GO:0005975 (carbohydrate metabolic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00128 (Alpha-amylase)
InterPro	-
eggNOG	-
NR	GeneID:130989667

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057769692.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057769692.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057769692.1`
4	Nucleus	细胞核	0.00000	`XP_057769692.1`
5	Chromosome	染色体	0.00000	`XP_057769692.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:42111829`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B10
`Chr6:42111829`	`CA`	`C`	1bp_deletion	CDS_variant	1	B10
`Chr6:42111867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr6:42111868`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A3,B42
`Chr6:42111868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B42
`Chr6:42111900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,C24
`Chr6:42111930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B37,B84
`Chr6:42111936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr6:42112939`	`CG`	`C`	1bp_deletion	frameshift_variant	6	B92,B96,C57,C62,C84,D9
`Chr6:42114618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr6:42115069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr6:42115501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769692.1

849 aa

424

849

Alpha-amylase

PF00128 Alpha-amylase 613-675 aa

XP_057769693.1

849 aa

424

849

Alpha-amylase

PF00128 Alpha-amylase 613-675 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769692.1`	Pfam	`PF00128`	Alpha-amylase	Domain	613	675	2.3e-10	41.0	Alpha amylase, catalytic domain
`XP_057769693.1`	Pfam	`PF00128`	Alpha-amylase	Domain	613	675	2.3e-10	41.0	Alpha amylase, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913709.1
AGTTTTTTACATAAATTTTGTCACATCCAAGAGCTTTTATGCACATTAACTTAAATATAGAAATATTTTACAATTTTTTTTATAAAAATAAAGTAATTTCCTAACTTTGAGTTATAAAAAGAAGTCGAGAAGGGGCAGTGAGGTCTTTTCACACGAAATTCAACTTTGTCGAGAACAAGATCAACTTCCGGTCCCACTCGCGCAGGCTCTGCTTATCAGAAAGCGCAGAGCCTTTTTCAGTTTTCCCTCCCCGCCATTTG...

XM_057913710.1
AAGTCGAGAAGGGGCAGTGAGGTCTTTTCACACGAAATTCAACTTTGTCGAGAACAAGATCAACTTCCGGTCCCACTCGCGCAGGCTCTGCTTATCAGAAAGCGCAGAGCCTTTTTCAGTTTTCCCTCCCCGCCATTTGTCTGCTTCTCCTTCTCCACTTTTTCGACTCACAATCACTCATTCCATGCATTTCGCAGCGTTATAAAGTGGCGTAAGAGCTGCTGTTTTCCATTCATTAATGAACTGAAGCTCTTCTGTAT...

CDS

2 records

下载 CDS FASTA

LOC130989667
ATGAGTGCAGCTACGCTGCCTGATGCTGCCGTGTTTAGTACTTTCTTATGCAACCGGCATGTTTTGTGCGGCGCGCAATATCGCCGCGGTTTCCGTTTCGAGCTCAAACGGCAGCCAGTTATTGGAAGAAGATTTCATGACAAAAGGAGAAAACTATTAGATGCGAATGTTTGGCTCCATAGATCAAGATCTGTTGTTTGTTCAAGTACGAGTGATTCTGGAGATATTCAACCAACTTTTATTGATGAGGAGAATAGCAA...

Protein

2 records

下载 Protein FASTA

XP_057769692.1
MSAATLPDAAVFSTFLCNRHVLCGAQYRRGFRFELKRQPVIGRRFHDKRRKLLDANVWLHRSRSVVCSSTSDSGDIQPTFIDEENSNISESSEFQQTHEDELLATQIALADARAREQEFEKERGILLEKLAQAKAKQHEYEAAIMHEKELVIAELEAAKDLFHKKLQESVDEKFDLESKLILAKQDAVKLAVQVEKLAEIAFQQATSHILEDTKLRVSAAETSAADATYQIEEQIRSATEGTILSMVDQSKSAIAKALAV...

XP_057769693.1
MSAATLPDAAVFSTFLCNRHVLCGAQYRRGFRFELKRQPVIGRRFHDKRRKLLDANVWLHRSRSVVCSSTSDSGDIQPTFIDEENSNISESSEFQQTHEDELLATQIALADARAREQEFEKERGILLEKLAQAKAKQHEYEAAIMHEKELVIAELEAAKDLFHKKLQESVDEKFDLESKLILAKQDAVKLAVQVEKLAEIAFQQATSHILEDTKLRVSAAETSAADATYQIEEQIRSATEGTILSMVDQSKSAIAKALAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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