当前解析结果
SmilChr06G002929| 统一新 Gene ID | SmilChr06G002929 |
|---|---|
| 名称 | SmilChr06G002929 |
| 描述 | anaphase-promoting complex subunit 5-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42153638 - 42155436 / - |
| NCBI Gene ID | LOC130989669 |
|---|---|
| GeneID | 130989669 |
| locus_tag | - |
| NCBI Name | LOC130989669 |
| 原始查询 | SmilChr06G002929 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | anaphase-promoting complex subunit 5-like |
| 产物 | anaphase-promoting complex subunit 5-like |
| Arabidopsis | AT1G06590 (AT1G06590)anaphase-promoting complex subunit [Source:NCBI gene (formerly Entrezgene);Acc:837170] identity=46.9; qcov=1; evalue=8.23e-86; confidence=high |
| Rice | Os12g0626300 (APC5)- identity=38.2; qcov=0.997; evalue=1.99e-53; confidence=medium |
| GO | GO:0005680 (anaphase-promoting complex); GO:0031145 (anaphase-promoting complex-dependent catabolic process); GO:0045842 (positive regulation of mitotic metaphase/anaphase transition); GO:0070979 (protein K11-linked ubiquitination) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989669 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057769695.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057769695.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057769695.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057769695.1 |
| 5 | Lipid droplet | 脂滴 | 0.20000 | XP_057769695.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42153797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr6:42154234 |
AAT |
A |
2bp_deletion | frameshift_variant | 18 | B114,B123,B135,B34,B38,B39,B50,B52,B65,B75,B97,C34,C46,C47,C76,C81,D11,D3 |
Chr6:42154245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr6:42154305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr6:42154397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C49 |
Chr6:42154583 |
C |
CT |
1bp_insertion | frameshift_variant | 10 | A14,A20,B51,B85,B94,C18,C19,C60,C65,C83 |
Chr6:42154914 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B39,C36 |
Chr6:42154971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,C3 |
Chr6:42155051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C39 |
Chr6:42155160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C87 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。