当前解析结果
SmilChr06G002968| 统一新 Gene ID | SmilChr06G002968 |
|---|---|
| 名称 | SmilChr06G002968 |
| 描述 | biotin synthase, mitochondrial-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42509805 - 42513346 / + |
| NCBI Gene ID | LOC130989705 |
|---|---|
| GeneID | 130989705 |
| locus_tag | - |
| NCBI Name | LOC130989705 |
| 原始查询 | SmilChr06G002968 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | biotin synthase, mitochondrial-like |
| 产物 | biotin synthase%2C mitochondrial-like |
| Arabidopsis | AT2G43360 (BIO2)Radical SAM superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818937] identity=84.6; qcov=0.917; evalue=0; confidence=high |
| Rice | Os08g0540100 (P0666G10.131)- identity=86; qcov=0.899; evalue=0; confidence=high |
| GO | GO:0004076 (biotin synthase activity); GO:0005739 (mitochondrion); GO:0009102 (biotin biosynthetic process); GO:0051537 (2 iron, 2 sulfur cluster binding) |
| KEGG | smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04055 (Radical_SAM); PF06968 (BATS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989705 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057769756.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057769756.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769756.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769756.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769756.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42510132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,B83 |
Chr6:42510146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,B72 |
Chr6:42510201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,C45,D5 |
Chr6:42510203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B40 |
Chr6:42511010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,C49 |
Chr6:42511011 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B80 |
Chr6:42511011 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B80 |
Chr6:42511016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr6:42511024 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B133,B53,B64,C6 |
Chr6:42511084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:42511784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B77,B98,D11 |
Chr6:42511804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769756.1PF04055
Radical_SAM 83-244 aa
PF06968
BATS 257-347 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769756.1 |
Pfam | PF04055 |
Radical_SAM | Domain | 83 | 244 | 4.3e-23 | 83.0 | Radical SAM superfamily |
XP_057769756.1 |
Pfam | PF06968 |
BATS | Domain | 257 | 347 | 1.7e-27 | 96.1 | Biotin and Thiamin Synthesis associated domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。