当前解析结果
SmilChr06G002970| 统一新 Gene ID | SmilChr06G002970 |
|---|---|
| 名称 | SmilChr06G002970 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42517953 - 42521804 / + |
| NCBI Gene ID | LOC130989706 |
|---|---|
| GeneID | 130989706 |
| locus_tag | - |
| NCBI Name | LOC130989706 |
| 原始查询 | SmilChr06G002970 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=38; qcov=0.71; evalue=1.59e-150; confidence=medium |
| Rice | Os01g0769700 (DRUS2)- identity=38.5; qcov=0.697; evalue=1.07e-146; confidence=medium |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989706 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769757.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769757.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769757.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769757.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769757.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42518037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B46 |
Chr6:42518203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B40 |
Chr6:42518224 |
GT |
G |
1bp_deletion | frameshift_variant | 7 | A2,B42,B43,B53,B84,B90,C85 |
Chr6:42518233 |
C |
CT |
1bp_insertion | frameshift_variant | 7 | A2,B42,B43,B53,B84,B90,C85 |
Chr6:42518279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,B44 |
Chr6:42518321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr6:42518352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:42518435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr6:42518444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr6:42518448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr6:42518624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B60 |
Chr6:42518694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769757.1PF12819
Malectin_like 44-343 aa
PF00069
Pkinase 473-740 aa
PF07714
PK_Tyr_Ser-Thr 473-743 aa
PF00069
Pkinase 883-1136 aa
PF07714
PK_Tyr_Ser-Thr 891-1081 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769757.1 |
Pfam | PF12819 |
Malectin_like | Domain | 44 | 343 | 1e-07 | 32.3 | Malectin-like domain |
XP_057769757.1 |
Pfam | PF00069 |
Pkinase | Domain | 473 | 740 | 1.4e-74 | 251.6 | Protein kinase domain |
XP_057769757.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 473 | 743 | 1.5e-82 | 277.5 | Protein tyrosine and serine/threonine kinase |
XP_057769757.1 |
Pfam | PF00069 |
Pkinase | Domain | 883 | 1136 | 1.4e-74 | 251.6 | Protein kinase domain |
XP_057769757.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 891 | 1081 | 1.5e-82 | 277.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。