当前解析结果
SmilChr06G002971| 统一新 Gene ID | SmilChr06G002971 |
|---|---|
| 名称 | SmilChr06G002971 |
| 描述 | probable receptor-like protein kinase At5g38990 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42526298 - 42530237 / + |
| NCBI Gene ID | LOC130989708 |
|---|---|
| GeneID | 130989708 |
| locus_tag | - |
| NCBI Name | LOC130989708 |
| 原始查询 | SmilChr06G002971 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At5g38990 |
| 产物 | probable receptor-like protein kinase At5g38990 |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=37.8; qcov=0.708; evalue=1.78e-149; confidence=medium |
| Rice | Os01g0769700 (DRUS2)- identity=38.6; qcov=0.695; evalue=3.33e-147; confidence=medium |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989708 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769758.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769758.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769758.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769758.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769758.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42526323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C20 |
Chr6:42526333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C20 |
Chr6:42526456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B2,C14,C80 |
Chr6:42526495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,C19 |
Chr6:42526725 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr6:42526725 |
TG |
T |
1bp_deletion | CDS_variant | 1 | D10 |
Chr6:42526981 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B69 |
Chr6:42526981 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B69 |
Chr6:42527077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr6:42527094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B14,B4 |
Chr6:42527151 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | B140,B98,C10,C87 |
Chr6:42527151 |
GT |
G |
1bp_deletion | CDS_variant | 4 | B140,B98,C10,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769758.1PF12819
Malectin_like 44-343 aa
PF00069
Pkinase 473-740 aa
PF07714
PK_Tyr_Ser-Thr 473-743 aa
PF00069
Pkinase 886-1086 aa
PF07714
PK_Tyr_Ser-Thr 897-1085 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769758.1 |
Pfam | PF12819 |
Malectin_like | Domain | 44 | 343 | 1.3e-08 | 35.2 | Malectin-like domain |
XP_057769758.1 |
Pfam | PF00069 |
Pkinase | Domain | 473 | 740 | 1.6e-75 | 254.6 | Protein kinase domain |
XP_057769758.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 473 | 743 | 7.2e-84 | 281.8 | Protein tyrosine and serine/threonine kinase |
XP_057769758.1 |
Pfam | PF00069 |
Pkinase | Domain | 886 | 1086 | 1.6e-75 | 254.6 | Protein kinase domain |
XP_057769758.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 897 | 1085 | 7.2e-84 | 281.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。