当前解析结果
SmilChr06G002973| 统一新 Gene ID | SmilChr06G002973 |
|---|---|
| 名称 | SmilChr06G002973 |
| 描述 | uncharacterized SmilChr06G002973 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42562286 - 42576840 / + |
| NCBI Gene ID | LOC130989709 |
|---|---|
| GeneID | 130989709 |
| locus_tag | - |
| NCBI Name | LOC130989709 |
| 原始查询 | SmilChr06G002973 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | extra-large G-protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:816878]; symbol=XLG1; hit=AT2G23460; species=arabidopsis; confidence=low |
| 产物 | extra-large G-protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:816878]; symbol=XLG1; hit=AT2G23460; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G23460 (XLG1)extra-large G-protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:816878] identity=45.4; qcov=0.428; evalue=2.22e-161; confidence=low |
| Rice | Os12g0593000- identity=42.8; qcov=0.443; evalue=1.07e-153; confidence=low |
| GO | GO:0003924 (GTPase activity); GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0007186 (G protein-coupled receptor signaling pathway); GO:0009506 (plasmodesma); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00503 (G-alpha); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989709 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769759.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769759.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769759.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769759.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769759.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42566788 |
CA |
C |
1bp_deletion | frameshift_variant | 9 | B1,B101,B13,B46,C13,C54,C59,C72,C8 |
Chr6:42566790 |
A |
AT |
1bp_insertion | frameshift_variant | 11 | A18,B1,B101,B13,B41,B46,C13,C54,C59,C72,C8 |
Chr6:42566804 |
TC |
T |
1bp_deletion | frameshift_variant | 149 | A10,A11,A13,A14,A15,A18,A2,A20,A22,A23,A25,A3,A4,A6,A7,B10,B100,B101,B102,B103,B104,B106,B108,B109,B111,B112,B113,B114,B117,B118,B12,B120,B125,B129,B13,B133,B135,B137,B139,B14,B140,B15,B16,B19,B2,B22,B23,B24,B26,B28,B3,B30,B33,B34,B4,B40,B41,B42,B43,B44,B49,B5,B50,B54,B55,B62,B63,B65,B66,B67,B68,B69,B70,B71,B72,B73,B75,B77,B78,B8,B80,B81,B82,B83,B86,B88,B89,B91,B93,B97,B98,C10,C14,C15,C16,C17,C18,C2,C20,C21,C22,C23,C25,C27,C28,C3,C31,C32,C33,C37,C38,C39,C40,C43,C44,C45,C47,C48,C49,C5,C52,C53,C54,C55,C57,C59,C60,C61,C62,C63,C68,C71,C73,C75,C76,C77,C78,C79,C81,C82,C84,C85,C86,C87,D11,D2,D4,D5,D7 |
Chr6:42566808 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 7 | A15,B34,B36,B95,C1,C15,D8 |
Chr6:42566810 |
A |
ATT |
2bp_insertion | frameshift_variant | 7 | A15,B34,B36,B95,C1,C15,D8 |
Chr6:42566886 |
G |
A |
EMS_canonical_SNV | stop_gained | 23 | A19,A5,B119,B126,B130,B138,B21,B41,B48,B64,B74,B79,B89,C14,C24,C29,C3,C30,C32,C46,C48,C54,C68 |
Chr6:42567714 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B1,B13,C8 |
Chr6:42567714 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B1,B13,C8 |
Chr6:42567775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B19,B55,C23 |
Chr6:42567849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B66,B98,C18,C86 |
Chr6:42567874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B12,B62 |
Chr6:42567926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769759.1PF00069
Pkinase 498-767 aa
PF07714
PK_Tyr_Ser-Thr 500-770 aa
PF00503
G-alpha 1080-1445 aa
XP_057769760.1PF00069
Pkinase 459-728 aa
PF07714
PK_Tyr_Ser-Thr 461-731 aa
PF00503
G-alpha 1041-1406 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769759.1 |
Pfam | PF00069 |
Pkinase | Domain | 498 | 767 | 1.6e-45 | 156.2 | Protein kinase domain |
XP_057769759.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 500 | 770 | 2.4e-45 | 155.6 | Protein tyrosine and serine/threonine kinase |
XP_057769759.1 |
Pfam | PF00503 |
G-alpha | Domain | 1080 | 1445 | 2.3e-54 | 185.5 | G-protein alpha subunit |
XP_057769760.1 |
Pfam | PF00069 |
Pkinase | Domain | 459 | 728 | 1.6e-45 | 156.3 | Protein kinase domain |
XP_057769760.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 461 | 731 | 2.4e-45 | 155.6 | Protein tyrosine and serine/threonine kinase |
XP_057769760.1 |
Pfam | PF00503 |
G-alpha | Domain | 1041 | 1406 | 2.2e-54 | 185.6 | G-protein alpha subunit |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。