当前解析结果
SmilChr06G002981| 统一新 Gene ID | SmilChr06G002981 |
|---|---|
| 名称 | SmilChr06G002981 |
| 描述 | uncharacterized SmilChr06G002981 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42617882 - 42622631 / + |
| NCBI Gene ID | LOC130989716 |
|---|---|
| GeneID | 130989716 |
| locus_tag | - |
| NCBI Name | LOC130989716 |
| 原始查询 | SmilChr06G002981 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | confidence=no_hit |
| 产物 | confidence=no_hit |
| Arabidopsis | -- |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF03004 (Transposase_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989716 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769765.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057769765.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057769765.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057769765.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057769765.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42621185 |
AT |
A |
1bp_deletion | frameshift_variant | 12 | B11,B17,B18,B52,B98,C19,C28,C44,C57,C63,C80,C9 |
Chr6:42621274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B89,C71,C78 |
Chr6:42621283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,A25,B111,B67,B9 |
Chr6:42621294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B66,B96 |
Chr6:42621306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,A25,B111,B9 |
Chr6:42621324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B118,B128,B22,B90,C68 |
Chr6:42621331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr6:42621335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B74,C21 |
Chr6:42621343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B9,C80 |
Chr6:42621369 |
G |
GA |
1bp_insertion | frameshift_variant | 64 | A11,A25,A4,A6,B1,B109,B111,B112,B113,B12,B120,B121,B122,B125,B131,B137,B139,B140,B18,B19,B2,B26,B29,B3,B39,B40,B42,B43,B45,B48,B49,B60,B66,B7,B72,B8,B86,B89,B93,B94,B98,B99,C10,C11,C13,C18,C19,C30,C43,C45,C46,C65,C69,C71,C72,C74,C78,C81,C87,D10,D11,D4,D5,D7 |
Chr6:42621458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr6:42621459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B38 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769765.1PF03004
Transposase_24 126-186 aa
XP_057769768.1PF03004
Transposase_24 126-186 aa
XP_057769769.1PF03004
Transposase_24 126-186 aa
XP_057769770.1PF03004
Transposase_24 126-186 aa
XP_057769771.1PF03004
Transposase_24 126-186 aa
XP_057769772.1PF03004
Transposase_24 126-186 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769765.1 |
Pfam | PF03004 |
Transposase_24 | Family | 126 | 186 | 1.5e-12 | 48.6 | Plant transposase (Ptta/En/Spm family) |
XP_057769768.1 |
Pfam | PF03004 |
Transposase_24 | Family | 126 | 186 | 1.5e-12 | 48.6 | Plant transposase (Ptta/En/Spm family) |
XP_057769769.1 |
Pfam | PF03004 |
Transposase_24 | Family | 126 | 186 | 1.5e-12 | 48.6 | Plant transposase (Ptta/En/Spm family) |
XP_057769770.1 |
Pfam | PF03004 |
Transposase_24 | Family | 126 | 186 | 1.5e-12 | 48.6 | Plant transposase (Ptta/En/Spm family) |
XP_057769771.1 |
Pfam | PF03004 |
Transposase_24 | Family | 126 | 186 | 1.5e-12 | 48.6 | Plant transposase (Ptta/En/Spm family) |
XP_057769772.1 |
Pfam | PF03004 |
Transposase_24 | Family | 126 | 186 | 1.5e-12 | 48.6 | Plant transposase (Ptta/En/Spm family) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。