Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002982`

染色体: Chr06 坐标: 42626676-42628672 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002982`
名称	SmilChr06G002982
描述	cysteine-rich receptor-like protein kinase 24
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	42626676 - 42628672 / `+`

ID 对照

NCBI Gene ID	`LOC130989715`
GeneID	`130989715`
locus_tag	`-`
NCBI Name	`LOC130989715`
原始查询	`SmilChr06G002982`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine-rich receptor-like protein kinase 24
产物	cysteine-rich receptor-like protein kinase 24
Arabidopsis	`AT4G23320` (CRK24) cysteine-rich RLK (RECEPTOR-like protein kinase) 24 [Source:NCBI gene (formerly Entrezgene);Acc:828431] identity=41.8; qcov=0.72; evalue=4.77e-48; confidence=medium
Rice	`Os02g0710500` - identity=42.3; qcov=0.72; evalue=7.39e-49; confidence=medium
GO	GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130989715

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057769763.1`
2	Cytosol	细胞质基质	0.80000	`XP_057769763.1`
3	Cytoplasm	细胞质	0.40000	`XP_057769763.1`
4	Nucleus	细胞核	0.00000	`XP_057769763.1`
5	Chromosome	染色体	0.00000	`XP_057769763.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:42626921`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B140,B40
`Chr6:42626921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,B40
`Chr6:42626922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr6:42626927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr6:42627249`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B68,C73
`Chr6:42627249`	`AG`	`A`	1bp_deletion	CDS_variant	2	B68,C73
`Chr6:42627254`	`AT`	`A`	1bp_deletion	frameshift_variant	3	B10,B89,C43
`Chr6:42627254`	`AT`	`A`	1bp_deletion	CDS_variant	3	B10,B89,C43
`Chr6:42627255`	`TC`	`*`	1bp_deletion	CDS_variant	3	B10,B89,C43
`Chr6:42627265`	`GA`	`G`	1bp_deletion	frameshift_variant	24	A18,A8,B101,B128,B2,B24,B25,B28,B90,B92,C14,C17,C19,C48,C5,C57,C62,C63,C73,C80,D1,D11,D5,D9
`Chr6:42627318`	`GGT`	`G`	2bp_deletion	frameshift_variant	1	B104
`Chr6:42627318`	`GGT`	`G`	2bp_deletion	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769763.1

288 aa

144

288

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 11-186 aa PF00069 Pkinase 21-186 aa

XP_057769764.1

279 aa

140

279

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 11-177 aa PF00069 Pkinase 21-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769763.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	11	186	3.9e-20	73.0	Protein tyrosine and serine/threonine kinase
`XP_057769763.1`	Pfam	`PF00069`	Pkinase	Domain	21	186	5e-17	62.9	Protein kinase domain
`XP_057769764.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	11	177	5.4e-18	66.0	Protein tyrosine and serine/threonine kinase
`XP_057769764.1`	Pfam	`PF00069`	Pkinase	Domain	21	177	5.8e-14	52.8	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913781.1
CTTGTAGGTTGGTTGAATTATTTTTATAAAATGAGTGCTGCTTATAAGATAATGAGAAAGTAAATTGGGGTAGAGAAACTTATTTTTTGGGGAGCTTATAAAGCCTTAGAGCTTATTTTTACAACCTATAAGCTCTTTAAGAACTTATTTTGCTTAACACTTTGAAGGAGCTTATAAGCTCGGCCAAACACCCTCTTAGTTCTTGTTTCTTCAATGTAATGGAACATTTGCTCATAGATGAACAACGATGTCGTCAGCTT...

XM_057913780.1
ATAAAATGAGTGCTGCTTATAAGATAATGAGAAAGTAAATTGGGGTAGAGAAACTTATTTTTTGGGGAGCTTATAAAGCCTTAGAGCTTATTTTTACAACCTATAAGCTCTTTAAGAACTTATTTTGCTTAACACTTTGAAGGAGCTTATAAGCTCGGCCAAACACCCTCTTAGTTCTTGTTTCTTCAATGTAATGGAACATTTGCTCATAGATGAACAACGATGTCGTCAGCTTCAGTGGTCAGCACGCTTCAAAATCA...

CDS

2 records

下载 CDS FASTA

LOC130989715
ATGGAACATTTGCTCATAGATGAACAACGATGTCGTCAGCTTCAGTGGTCAGCACGCTTCAAAATCATAATTGGGATTGCTAAAGGAGTTATTTATCTTCATCAAGAGTTGAGTCCGAAAACGATTCATAGGAATCTGAACCCCACCAATATATTTCTGGACAATGAGATGAATCCTAAAATTTCAGGCTTTGCCGCAGCCAGATATTTTCAAGATGACGACCAATCAAAAATGTCCGTCACCATTAATGCTGGAACCAT...

Protein

2 records

下载 Protein FASTA

XP_057769763.1
MEHLLIDEQRCRQLQWSARFKIIIGIAKGVIYLHQELSPKTIHRNLNPTNIFLDNEMNPKISGFAAARYFQDDDQSKMSVTINAGTIGYLPPEYFLEGRISEKTDVYNFGVLVLEILSGKRNSRDTENLIGDTWKLLTGNKDVFKTVDGYLGEEFSEEEASRCIQVGLLCTQYGPQQRPKMASALKMLLGEDVSLQEKMAQAHCPSYLDPDFADLPNFDFFNPRNCSNERQSYFHSVAPHNMEVDYATNCVQQIGQIQTP...

XP_057769764.1
MEHLLIDEQRCRQLQWSARFKIIIGIAKGVIYLHQELSPKTIHRNLNPTNIFLDNEMNPKISGFAAARYFQDDDQSKIGYLPPEYFLEGRISEKTDVYNFGVLVLEILSGKRNSRDTENLIGDTWKLLTGNKDVFKTVDGYLGEEFSEEEASRCIQVGLLCTQYGPQQRPKMASALKMLLGEDVSLQEKMAQAHCPSYLDPDFADLPNFDFFNPRNCSNERQSYFHSVAPHNMEVDYATNCVQQIGQIQTPLIPPVEREL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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