当前解析结果
SmilChr06G002989| 统一新 Gene ID | SmilChr06G002989 |
|---|---|
| 名称 | SmilChr06G002989 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42707566 - 42709698 / + |
| NCBI Gene ID | LOC130990992 |
|---|---|
| GeneID | 130990992 |
| locus_tag | - |
| NCBI Name | LOC130990992 |
| 原始查询 | SmilChr06G002989 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=42.3; qcov=0.53; evalue=5.75e-63; confidence=medium |
| Rice | Os05g0318700 (OsCrRLK1L3)- identity=43.7; qcov=0.561; evalue=3.87e-66; confidence=medium |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771181.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057771181.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771181.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771181.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771181.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42708265 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B44 |
Chr6:42708265 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B44 |
Chr6:42708288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B28,C17,C19 |
Chr6:42708319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,C17,C19 |
Chr6:42708336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,C17,C19 |
Chr6:42708372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,C17,C19 |
Chr6:42708402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C17,C19 |
Chr6:42708585 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B10 |
Chr6:42708585 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B10 |
Chr6:42708610 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr6:42708695 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C87 |
Chr6:42708695 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771181.1PF07714
PK_Tyr_Ser-Thr 4-166 aa
PF00069
Pkinase 7-165 aa
PF00069
Pkinase 293-488 aa
PF07714
PK_Tyr_Ser-Thr 296-488 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771181.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 4 | 166 | 4.8e-55 | 187.4 | Protein tyrosine and serine/threonine kinase |
XP_057771181.1 |
Pfam | PF00069 |
Pkinase | Domain | 7 | 165 | 2.4e-51 | 175.4 | Protein kinase domain |
XP_057771181.1 |
Pfam | PF00069 |
Pkinase | Domain | 293 | 488 | 2.4e-51 | 175.4 | Protein kinase domain |
XP_057771181.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 296 | 488 | 4.8e-55 | 187.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。