当前解析结果
SmilChr06G003009| 统一新 Gene ID | SmilChr06G003009 |
|---|---|
| 名称 | SmilChr06G003009 |
| 描述 | auxin transport protein BIG |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42953956 - 42973824 / - |
| NCBI Gene ID | LOC130989742 |
|---|---|
| GeneID | 130989742 |
| locus_tag | - |
| NCBI Name | LOC130989742 |
| 原始查询 | SmilChr06G003009 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | auxin transport protein BIG |
| 产物 | auxin transport protein BIG |
| Arabidopsis | AT3G02260 (BIG)auxin transport protein (BIG) [Source:NCBI gene (formerly Entrezgene);Acc:820398] identity=63; qcov=1.01; evalue=0; confidence=high |
| Rice | Os09g0247700- identity=59.2; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0005829 (cytosol); GO:0008270 (zinc ion binding); GO:0009506 (plasmodesma); GO:0009926 (auxin polar transport) |
| KEGG | - |
| Pfam | PF00569 (ZZ); PF13764 (E3_UbLigase_R4); PF24079 (UBR4); PF30802 (zf-UBR_1); PF30837 (UBR4_Ub); PF30838 (UBR4_TPR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989742 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057769810.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057769810.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057769810.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057769810.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42954307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,B36,C15,C46 |
Chr6:42954544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B41,B44,B80,C35 |
Chr6:42954608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B75,B90,B92 |
Chr6:42954743 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B114 |
Chr6:42954743 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B114 |
Chr6:42954748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr6:42955412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B100,C8,D11 |
Chr6:42955420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr6:42955453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B66,B77,B8 |
Chr6:42955886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr6:42956350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C8 |
Chr6:42956847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769810.1PF30802
zf-UBR_1 1562-1618 aa
PF00569
ZZ 2604-2636 aa
PF24079
UBR4 3504-3629 aa
PF30837
UBR4_Ub 4158-4284 aa
PF30838
UBR4_TPR 4301-4643 aa
PF13764
E3_UbLigase_R4 4706-5042 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769810.1 |
Pfam | PF30802 |
zf-UBR_1 | Domain | 1562 | 1618 | 1.2e-08 | 35.9 | UBR box |
XP_057769810.1 |
Pfam | PF00569 |
ZZ | Domain | 2604 | 2636 | 3.3e-09 | 37.1 | Zinc finger, ZZ type |
XP_057769810.1 |
Pfam | PF24079 |
UBR4 | Domain | 3504 | 3629 | 1.7e-34 | 119.6 | E3 ubiquitin-protein ligase UBR4-like domain |
XP_057769810.1 |
Pfam | PF30837 |
UBR4_Ub | Domain | 4158 | 4284 | 8.9e-49 | 164.6 | E3 ubiquitin-protein ligase UBR4 ubiquitin-like domain |
XP_057769810.1 |
Pfam | PF30838 |
UBR4_TPR | Repeat | 4301 | 4643 | 2.6e-108 | 362.7 | E3 ubiquitin-protein ligase UBR4 TPR-like domain |
XP_057769810.1 |
Pfam | PF13764 |
E3_UbLigase_R4 | Family | 4706 | 5042 | 6.5e-123 | 410.7 | E3 ubiquitin-protein ligase UBR4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。