当前解析结果
SmilChr06G003013| 统一新 Gene ID | SmilChr06G003013 |
|---|---|
| 名称 | SmilChr06G003013 |
| 描述 | glutathione transferase GST 23-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42999291 - 43001028 / - |
| NCBI Gene ID | LOC130989747 |
|---|---|
| GeneID | 130989747 |
| locus_tag | - |
| NCBI Name | LOC130989747 |
| 原始查询 | SmilChr06G003013 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione transferase GST 23-like |
| 产物 | glutathione transferase GST 23-like |
| Arabidopsis | AT3G09270 (GSTU8)glutathione S-transferase TAU 8 [Source:NCBI gene (formerly Entrezgene);Acc:820083] identity=45.2; qcov=0.978; evalue=1.18e-59; confidence=high |
| Rice | Os09g0467200 (OsGSTU17)- identity=46.7; qcov=0.888; evalue=2.18e-61; confidence=high |
| GO | GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989747 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057769816.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057769816.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769816.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769816.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769816.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42999420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B75,B90,B92 |
Chr6:42999434 |
T |
TTG |
2bp_insertion | frameshift_variant | 11 | B100,B56,B61,B64,B67,B96,C25,C37,C47,C6,C8 |
Chr6:42999438 |
TAC |
T |
2bp_deletion | frameshift_variant | 11 | B100,B56,B61,B64,B67,B96,C25,C37,C47,C6,C8 |
Chr6:42999517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr6:42999523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,C8,D7 |
Chr6:42999609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr6:42999663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:42999719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr6:42999721 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B137 |
Chr6:42999721 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B137 |
Chr6:42999723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr6:42999724 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | B137 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769816.1PF02798
GST_N 1-73 aa
PF13417
GST_N_3 5-77 aa
PF13409
GST_N_2 10-74 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769816.1 |
Pfam | PF02798 |
GST_N | Domain | 1 | 73 | 1.6e-17 | 64.3 | Glutathione S-transferase, N-terminal domain |
XP_057769816.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 5 | 77 | 2.7e-17 | 63.6 | Glutathione S-transferase, N-terminal domain |
XP_057769816.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 10 | 74 | 3.6e-16 | 60.2 | Glutathione S-transferase, N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。