Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003018`

染色体: Chr06 坐标: 43033293-43047222 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003018`
名称	SmilChr06G003018
描述	truncated transcription factor CAULIFLOWER A-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43033293 - 43047222 / `-`

ID 对照

NCBI Gene ID	`LOC130989751`
GeneID	`130989751`
locus_tag	`-`
NCBI Name	`LOC130989751`
原始查询	`SmilChr06G003018`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	truncated transcription factor CAULIFLOWER A-like
产物	truncated transcription factor CAULIFLOWER A-like
Arabidopsis	`AT5G60910` (AGL8) AGAMOUS-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:836212] identity=45.1; qcov=1.28; evalue=7.3e-51; confidence=high
Rice	`Os07g0605200` (MADS18) - identity=40.6; qcov=1.33; evalue=3.9e-46; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:130989751

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769824.1`
2	Chromosome	染色体	0.00000	`XP_057769824.1`
3	Centromere	着丝粒	0.00000	`XP_057769824.1`
4	Chromatin	染色质	0.00000	`XP_057769824.1`
5	Telomere	端粒	0.00000	`XP_057769824.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43033467`	`CA`	`C`	1bp_deletion	frameshift_variant	27	B1,B107,B121,B135,B17,B30,B36,B60,B62,B7,B72,B84,B85,B87,B94,B99,C15,C25,C3,C42,C51,C54,C65,C74,C75,D6,D9
`Chr6:43033494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr6:43041742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:43046877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769824.1

226 aa

113

226

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 80-166 aa

XP_057769825.1

225 aa

112

225

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 79-165 aa

XP_057769826.1

205 aa

102

205

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 80-165 aa

XP_057769827.1

184 aa

184

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 57-124 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769824.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.1e-24	86.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057769824.1`	Pfam	`PF01486`	K-box	Family	80	166	4.6e-23	81.9	K-box region
`XP_057769825.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.1e-24	86.3	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057769825.1`	Pfam	`PF01486`	K-box	Family	79	165	6.5e-23	81.4	K-box region
`XP_057769826.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	8.5e-25	86.7	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057769826.1`	Pfam	`PF01486`	K-box	Family	80	165	6.2e-23	81.5	K-box region
`XP_057769827.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	7.7e-25	86.8	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057769827.1`	Pfam	`PF01486`	K-box	Family	57	124	1.4e-18	67.5	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057913843.1
CAAATCCATACCAGAGAGAGAGAGAGAGAGAGAGAGAGGATATGGTTGCTTTATGAGACATGAACTTTACCAAAGTGGAAAGCATCAGTCAATTTATATATGTCAGGATCAAAACCCCACCCCTCTCTCTCTCTCTCGTCTCCCCCTTTAAATGCGAATGCGATGCAAGCTAGCTTAATATTAGCTTCGTGAAGAATTTAGGGTTTGCAGAGGGGAAAAAATGGGTCGAGGTAGGGTTGAGCTGAAGCGGATTGAAAACA...

XM_057913844.1
ATCCATACCAGAGAGAGAGAGAGAGAGAGAGAGAGGATATGGTTGCTTTATGAGACATGAACTTTACCAAAGTGGAAAGCATCAGTCAATTTATATATGTCAGGATCAAAACCCCACCCCTCTCTCTCTCTCTCGTCTCCCCCTTTAAATGCGAATGCGATGCAAGCTAGCTTAATATTAGCTTCGTGAAGAATTTAGGGTTTGCAGAGGGGAAAAAATGGGTCGAGGTAGGGTTGAGCTGAAGCGGATTGAAAACAAGA...

CDS

4 records

下载 CDS FASTA

LOC130989751
ATGGGTCGAGGTAGGGTTGAGCTGAAGCGGATTGAAAACAAGATTAGCCGCCAAGTCACCTTCTCCAAGAGAAGATCAGGCCTCTGGAAAAAGGCCAATGAGATCTCAGTTCTCTGCGATGCCCACGTTGCTTTGATTGTCTTCTCCACCAAAGGAAAACTCTTCGAGTTCTCCTCTCATTCAAGCATGGGAAGACTTCTTAAACGATACGAGCATCACAGTGGCGAGCCTAGTGAAGCCAAGGTTGAAGACTTGTTCCA...

LOC130989751
ATGGGTCGAGGTAGGGTTGAGCTGAAGCGGATTGAAAACAAGATTAGCCGCCAAGTCACCTTCTCCAAGAGAAGATCAGGCCTCTGGAAAAAGGCCAATGAGATCTCAGTTCTCTGCGATGCCCACGTTGCTTTGATTGTCTTCTCCACCAAAGGAAAACTCTTCGAGTTCTCCTCTCATTCAAGGAATTACGCGGGAGAGGATCTGGATCCACTGAGCTTGAGAGATCTCCACAGTGTTGAAAATCAACTCGGAAATGC...

Protein

4 records

下载 Protein FASTA

XP_057769824.1
MGRGRVELKRIENKISRQVTFSKRRSGLWKKANEISVLCDAHVALIVFSTKGKLFEFSSHSSMGRLLKRYEHHSGEPSEAKVEDLFHEYPKLVDRLQLLERNMRNYAGEDLDPLSLRDLHSVENQLGNALKRIRTKKNQLMHEAISQHQKKEKSLLHQNLTLKKEMKERQQAGDSREQEQQAQNISSSKLPYLRNLTMVGGSDGAAEDGGSDCRIPAWLVDHVPRR

XP_057769825.1
MGRGRVELKRIENKISRQVTFSKRRSGLWKKANEISVLCDAHVALIVFSTKGKLFEFSSHSSMGRLLKRYEHHSGEPSEAKEDLFHEYPKLVDRLQLLERNMRNYAGEDLDPLSLRDLHSVENQLGNALKRIRTKKNQLMHEAISQHQKKEKSLLHQNLTLKKEMKERQQAGDSREQEQQAQNISSSKLPYLRNLTMVGGSDGAAEDGGSDCRIPAWLVDHVPRR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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