Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003025`

染色体: Chr06 坐标: 43092399-43094365 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003025`
名称	SmilChr06G003025
描述	MYB-like transcription factor EOBII
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43092399 - 43094365 / `-`

ID 对照

NCBI Gene ID	`LOC130989758`
GeneID	`130989758`
locus_tag	`-`
NCBI Name	`LOC130989758`
原始查询	`SmilChr06G003025`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MYB-like transcription factor EOBII
产物	MYB-like transcription factor EOBII
Arabidopsis	`AT3G30210` (MYB121) myb domain protein 121 [Source:NCBI gene (formerly Entrezgene);Acc:822714] identity=63; qcov=0.73; evalue=6.2e-69; confidence=high
Rice	`Os02g0618400` (OsMPS) - identity=72.1; qcov=0.581; evalue=1.11e-60; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:130989758

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769838.1`
2	Chromosome	染色体	0.00000	`XP_057769838.1`
3	Centromere	着丝粒	0.00000	`XP_057769838.1`
4	Chromatin	染色质	0.00000	`XP_057769838.1`
5	Telomere	端粒	0.00000	`XP_057769838.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43092552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:43092586`	`CA`	`C`	1bp_deletion	frameshift_variant	79	A1,A10,A16,A18,A19,A23,A8,B10,B100,B102,B105,B106,B109,B11,B112,B118,B120,B123,B129,B131,B139,B14,B140,B15,B19,B21,B22,B26,B29,B3,B30,B31,B47,B50,B51,B55,B56,B57,B63,B65,B70,B71,B73,B78,B82,B83,B84,B89,B90,B92,B96,B97,B99,C10,C14,C20,C21,C23,C28,C29,C34,C35,C4,C43,C44,C47,C49,C52,C54,C59,C60,C61,C7,C75,C77,C84,C86,D10,D8
`Chr6:43092589`	`CAT`	`C`	2bp_deletion	frameshift_variant	79	A1,A10,A16,A18,A19,A23,A8,B10,B100,B102,B105,B106,B109,B11,B112,B118,B120,B123,B129,B131,B139,B14,B140,B15,B19,B21,B22,B26,B29,B3,B30,B31,B47,B50,B51,B55,B56,B57,B63,B65,B70,B71,B73,B78,B82,B83,B84,B89,B90,B92,B96,B97,B99,C10,C14,C20,C21,C23,C28,C29,C34,C35,C4,C43,C44,C47,C49,C52,C54,C59,C60,C61,C7,C75,C77,C84,C86,D10,D8
`Chr6:43092596`	`G`	`GCC`	2bp_insertion	frameshift_variant	19	A20,A9,B104,B109,B133,B25,B4,B48,B50,B58,B8,C20,C27,C31,C34,C5,C51,C56,C65
`Chr6:43092602`	`G`	`GCC`	2bp_insertion	frameshift_variant	79	A11,A14,A15,A16,A19,A2,A21,A25,A3,A4,A5,A6,A7,B103,B108,B11,B110,B115,B119,B120,B122,B126,B130,B132,B138,B15,B18,B19,B23,B28,B30,B31,B32,B47,B49,B5,B58,B60,B61,B62,B66,B7,B74,B76,B79,B86,B89,B9,C11,C17,C25,C26,C3,C32,C36,C41,C46,C48,C53,C54,C59,C62,C68,C69,C71,C72,C79,C8,C80,C81,C83,C9,D10,D11,D2,D3,D4,D5,D7
`Chr6:43092616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:43092764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:43092783`	`T`	`TGC`	2bp_insertion	frameshift_variant	1	B70
`Chr6:43092783`	`T`	`TGC`	2bp_insertion	CDS_variant	1	B70
`Chr6:43092809`	`AC`	`A`	1bp_deletion	frameshift_variant	79	A13,A15,A2,A25,A4,A6,B102,B104,B107,B110,B113,B114,B122,B124,B13,B130,B131,B134,B136,B137,B140,B15,B16,B19,B23,B26,B30,B34,B36,B4,B41,B42,B43,B44,B45,B49,B52,B60,B62,B64,B65,B68,B7,B73,B86,B9,B91,B95,B98,C1,C10,C13,C15,C16,C17,C18,C20,C25,C3,C30,C31,C36,C40,C41,C45,C54,C56,C6,C64,C66,C71,C72,C73,C80,C81,C82,D11,D4,D7
`Chr6:43093726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr6:43093752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B88,B91,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769838.1

222 aa

111

222

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 13-60 aa PF13921 Myb_DNA-bind_6 16-74 aa PF00249 Myb_DNA-binding 66-110 aa PF13921 Myb_DNA-bind_6 70-116 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769838.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	13	60	3e-37	127.2	Myb-like DNA-binding domain
`XP_057769838.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	16	74	3.2e-23	82.4	Myb-like DNA-binding domain
`XP_057769838.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	66	110	3e-37	127.2	Myb-like DNA-binding domain
`XP_057769838.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	70	116	3.2e-23	82.4	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057913855.1
GAAAAAAAATTGTAAAAAAGCCTGTGTATTTTAACTCTTTCTTCTTCTCTTTTTTTTTTAAAAATAAATAAATCTTGTAACAATAACGTACATTAGCATTATTTCATCTCCTTTGTGAGACTAAGTGACTAAGGTACGAATCTCAATCTTCCCATGTTCCAACTAAAAAAAAAACACAATTAAAATAAGAAAAGTAAAAGAAGTATATATGATTAATTAATAGTAATATCAGTCCTTCTTCATCGTACTAAAACCGTGTT...

CDS

1 records

下载 CDS FASTA

LOC130989758
ATGGGGAGCCTCGGAGTTGCAGAGCAAGGATGGAGGAAAGGGCCATGGACGCCTGAAGAAGATAAGCTGCTTGTTGAGTATGTGAGCAGCTATGGCGAAGGGAGATGGAGCTGTGTCTCTAAGTGTGCAGGTTTGAATAGGAGTGGGAAGAGCTGCAGGCTTAGATGGGTGAATTATTTGAGGCCTGGCCTTAAAAAAGGCCATATTACACCACAGGAGGAAGGGATCATCATTGAACTCCATGCCCTTTGGGGAAACAA...

Protein

1 records

下载 Protein FASTA

XP_057769838.1
MGSLGVAEQGWRKGPWTPEEDKLLVEYVSSYGEGRWSCVSKCAGLNRSGKSCRLRWVNYLRPGLKKGHITPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKRKSASSHESRQEKQEEEEEARIDSKIGKVEDEQGKKVCRSSDQLMLATAHEDCNSTWCWSDFDNCFGLWDMDDQNGCSKMAIHSQPNIARGGAGAGDGGDAMCSGGYIF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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