Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003028`

染色体: Chr06 坐标: 43117880-43120963 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003028`
名称	SmilChr06G003028
描述	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43117880 - 43120963 / `-`

ID 对照

NCBI Gene ID	`LOC130989760`
GeneID	`130989760`
locus_tag	`-`
NCBI Name	`LOC130989760`
原始查询	`SmilChr06G003028`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like
产物	palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase%2C chloroplastic-like
Arabidopsis	`AT3G15850` (FAD5) fatty acid desaturase 5 [Source:NCBI gene (formerly Entrezgene);Acc:820828] identity=73; qcov=0.907; evalue=7.21e-127; confidence=high
Rice	`-` -
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006629 (lipid metabolic process); GO:0009979 (GO:0009979); GO:0016717 (oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water)
KEGG	-
Pfam	PF00487 (FA_desaturase)
InterPro	-
eggNOG	-
NR	GeneID:130989760

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057769840.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057769840.1`
3	Nucleus	细胞核	0.00000	`XP_057769840.1`
4	Chromosome	染色体	0.00000	`XP_057769840.1`
5	Centromere	着丝粒	0.00000	`XP_057769840.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43118841`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C29
`Chr6:43118841`	`TA`	`T`	1bp_deletion	CDS_variant	1	C29
`Chr6:43118917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B40,B78
`Chr6:43118926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B107,B93,C85,D2
`Chr6:43119272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,D10
`Chr6:43119306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:43119368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B97,C73,C86
`Chr6:43120195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B40,B78
`Chr6:43120227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr6:43120891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B45,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769840.1

314 aa

157

314

FA_desaturase

PF00487 FA_desaturase 66-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769840.1`	Pfam	`PF00487`	FA_desaturase	Domain	66	285	8.8e-18	65.7	Fatty acid desaturase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913859.1
CAAATATACCATTAAATTCTATAAAAGGCTAGCACCCCACGTAACCCAAGCCAACAAGAATGACTCTCTTGGTGCCACCAATGTCTGGGCATGAAAAAGATTCAAACTTTGGGAGAATCATGCTGTCAGATGTGGTGGTGAAGAGGAAGAGGAATGTGTTTTGGGGCAGAAAGTGGAATTCTTTAGATATTGGGATTGCTTTTGTGGTGGCAGCTCTGCATTTGTTGTGTGTTTTAGCTCCTTCCACATTCAACTGGGCT...

XM_057913858.1
TCAAATATACCATTAAATTCTATAAAAGGCTAGCACCCCACGTAACCCAAGCCAACAAGAATGACTCTCTTGGTGCCACCAATGTCTGGGCATGAAAAAGATTCAAACTTTGGGAGAATCATGCTGTCAGATGTGGTGGTGAAGAGGAAGAGGAATGTGTTTTGGGGCAGAAAGTGGAATTCTTTAGATATTGGGATTGCTTTTGTGGTGGCAGCTCTGCATTTGTTGTGTGTTTTAGCTCCTTCCACATTCAACTGGGC...

CDS

3 records

下载 CDS FASTA

LOC130989760
ATGACTCTCTTGGTGCCACCAATGTCTGGGCATGAAAAAGATTCAAACTTTGGGAGAATCATGCTGTCAGATGTGGTGGTGAAGAGGAAGAGGAATGTGTTTTGGGGCAGAAAGTGGAATTCTTTAGATATTGGGATTGCTTTTGTGGTGGCAGCTCTGCATTTGTTGTGTGTTTTAGCTCCTTCCACATTCAACTGGGCTGCCTTGGGCGTTGCAGTTGGATTGTATGTAATCACTGGGCTTCTCGGAATCACTCTCTC...

Protein

3 records

下载 Protein FASTA

XP_057769840.1
MTLLVPPMSGHEKDSNFGRIMLSDVVVKRKRNVFWGRKWNSLDIGIAFVVAALHLLCVLAPSTFNWAALGVAVGLYVITGLLGITLSFHRNLSHRSFKLPKWLEYFFAYCGSLALQGNPIEWVSTHRYHHQFCDTEKDPHSPIEGFWFSHMSWLFDTDNVAQRCGEPNNVGDLEKQLFYKFLQKTYILHHVALGALLYAMGGFPYIVWGMGVRIVWVYHITWLVNSACHIWGRQAWNTGDLSRNNWWVAMLAFGEGWHNN...

XP_057769841.1
MTLLVPPMSGHEKDSNFGRIMLSDVVVKRKRNVFWGRKWNSLDIGIAFVVAALHLLCVLAPSTFNWAALGVAVGLYVITGLLGITLSFHRNLSHRSFKLPKWLEYFFAYCGSLALQGNPIEWVSTHRYHHQFCDTEKDPHSPIEGFWFSHMSWLFDTDNVAQRCGEPNNVGDLEKQLFYKFLQKTYILHHVALGALLYAMGGFPYIVWGMGVRIVWVYHITWLVNSACHIWGRQAWNTGDLSRNNWLLEALGLATHIKLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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