当前解析结果
SmilChr06G003035| 统一新 Gene ID | SmilChr06G003035 |
|---|---|
| 名称 | SmilChr06G003035 |
| 描述 | cytochrome P450 85A1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43149679 - 43152622 / - |
| NCBI Gene ID | LOC130989766 |
|---|---|
| GeneID | 130989766 |
| locus_tag | - |
| NCBI Name | LOC130989766 |
| 原始查询 | SmilChr06G003035 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 85A1-like |
| 产物 | cytochrome P450 85A1-like |
| Arabidopsis | AT3G30180 (BR6OX2)brassinosteroid-6-oxidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:822709] identity=68.4; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0602300 (brd1)- identity=66.7; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016125 (sterol metabolic process); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00905 (Brassinosteroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989766 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057769848.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057769848.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769848.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769848.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769848.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43149937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B13 |
Chr6:43150244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr6:43150939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr6:43151373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C23,D4 |
Chr6:43151472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B32 |
Chr6:43151476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,C1,C15,C25 |
Chr6:43151542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr6:43151663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A3,B10,C17 |
Chr6:43151737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr6:43151983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C25 |
Chr6:43152130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C17,C53,C60,C78 |
Chr6:43152195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B69,B72,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769848.1PF00067
p450 35-443 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769848.1 |
Pfam | PF00067 |
p450 | Domain | 35 | 443 | 5.5e-57 | 194.3 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。