当前解析结果
SmilChr06G003037| 统一新 Gene ID | SmilChr06G003037 |
|---|---|
| 名称 | SmilChr06G003037 |
| 描述 | PI-PLC X domain-containing protein At5g67130-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43219174 - 43223307 / - |
| NCBI Gene ID | LOC130990998 |
|---|---|
| GeneID | 130990998 |
| locus_tag | - |
| NCBI Name | LOC130990998 |
| 原始查询 | SmilChr06G003037 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PI-PLC X domain-containing protein At5g67130-like |
| 产物 | PI-PLC X domain-containing protein At5g67130-like |
| Arabidopsis | AT1G13680 (AT1G13680)PLC-like phosphodiesterases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837929] identity=58.4; qcov=0.969; evalue=4.49e-150; confidence=high |
| Rice | Os03g0415200 (OSJNBb0059G13.6)- identity=66.5; qcov=0.91; evalue=1.95e-167; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0008081 (phosphoric diester hydrolase activity) |
| KEGG | - |
| Pfam | PF26146 (PI-PLC_X) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990998 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057771187.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057771187.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057771187.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771187.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771187.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43219231 |
C |
CTA |
2bp_insertion | frameshift_variant | 4 | B75,B82,B86,C7 |
Chr6:43219231 |
C |
CTA |
2bp_insertion | CDS_variant | 4 | B75,B82,B86,C7 |
Chr6:43219266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr6:43219322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:43220038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B97,C83 |
Chr6:43220086 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B41,B71 |
Chr6:43220086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B71 |
Chr6:43220240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B112,C84,D11 |
Chr6:43220272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B91,B93,C87,D7 |
Chr6:43220273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:43220997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B4,C15,C20 |
Chr6:43221069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B133,B4,C15,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771187.1PF26146
PI-PLC_X 77-337 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771187.1 |
Pfam | PF26146 |
PI-PLC_X | Domain | 77 | 337 | 3.9e-24 | 86.3 | PI-PLC X 1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。