当前解析结果
SmilChr06G003046| 统一新 Gene ID | SmilChr06G003046 |
|---|---|
| 名称 | SmilChr06G003046 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43321450 - 43324186 / - |
| NCBI Gene ID | LOC130989774 |
|---|---|
| GeneID | 130989774 |
| locus_tag | - |
| NCBI Name | LOC130989774 |
| 原始查询 | SmilChr06G003046 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=49.1; qcov=0.962; evalue=0; confidence=high |
| Rice | Os01g0769700 (DRUS2)- identity=46.7; qcov=0.966; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989774 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769858.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769858.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769858.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769858.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769858.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43321566 |
T |
TAA |
2bp_insertion | frameshift_variant | 2 | B100,D5 |
Chr6:43321566 |
T |
TAA |
2bp_insertion | CDS_variant | 2 | B100,D5 |
Chr6:43321573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B104,B66 |
Chr6:43321592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr6:43321600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,D5 |
Chr6:43321680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C46,C85 |
Chr6:43321720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr6:43321747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B4,C20,C69 |
Chr6:43321760 |
G |
A |
EMS_canonical_SNV | stop_gained | 34 | A1,A19,A9,B102,B112,B120,B121,B123,B124,B129,B137,B139,B29,B37,B45,B50,B6,B67,B81,B88,B99,C1,C10,C26,C47,C50,C64,C66,C67,C69,C7,C70,C76,C84 |
Chr6:43321766 |
C |
CA |
1bp_insertion | frameshift_variant | 12 | A18,A6,B111,B113,B115,B34,B86,B9,C1,C34,C81,C86 |
Chr6:43321786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr6:43321796 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B119,B49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769858.1PF12819
Malectin_like 36-403 aa
PF11721
Malectin 258-362 aa
PF00069
Pkinase 524-789 aa
PF07714
PK_Tyr_Ser-Thr 524-790 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769858.1 |
Pfam | PF12819 |
Malectin_like | Domain | 36 | 403 | 4.1e-27 | 96.0 | Malectin-like domain |
XP_057769858.1 |
Pfam | PF11721 |
Malectin | Domain | 258 | 362 | 1.3e-12 | 48.8 | Malectin domain |
XP_057769858.1 |
Pfam | PF00069 |
Pkinase | Domain | 524 | 789 | 1.1e-46 | 160.1 | Protein kinase domain |
XP_057769858.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 524 | 790 | 6.8e-49 | 167.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。