当前解析结果
SmilChr06G003060| 统一新 Gene ID | SmilChr06G003060 |
|---|---|
| 名称 | SmilChr06G003060 |
| 描述 | mediator of RNA polymerase II transcription subunit 18 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43487282 - 43490196 / - |
| NCBI Gene ID | LOC130989786 |
|---|---|
| GeneID | 130989786 |
| locus_tag | - |
| NCBI Name | LOC130989786 |
| 原始查询 | SmilChr06G003060 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mediator of RNA polymerase II transcription subunit 18 |
| 产物 | mediator of RNA polymerase II transcription subunit 18 |
| Arabidopsis | AT2G22370 (AT2G22370)mediator of RNA polymerase II transcription subunit [Source:NCBI gene (formerly Entrezgene);Acc:816769] identity=83.4; qcov=1; evalue=2.53e-132; confidence=high |
| Rice | Os02g0193900 (P0437H03.127)- identity=74.4; qcov=0.972; evalue=4.8e-119; confidence=high |
| GO | GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0006369 (termination of RNA polymerase II transcription); GO:0016592 (mediator complex); GO:0070847 (core mediator complex) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989786 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769868.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057769868.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057769868.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769868.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769868.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43487654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr6:43487718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr6:43487738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr6:43488269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr6:43488272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:43488301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr6:43488402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C59 |
Chr6:43488403 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | A13,A23,B21,C32,D7 |
Chr6:43488403 |
AG |
A |
1bp_deletion | CDS_variant | 5 | A13,A23,B21,C32,D7 |
Chr6:43488585 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B136 |
Chr6:43488585 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B136 |
Chr6:43488612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B3,B52,B95,C30,C76 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。