Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003078`

染色体: Chr06 坐标: 43673541-43676182 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003078`
名称	SmilChr06G003078
描述	uncharacterized SmilChr06G003078
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43673541 - 43676182 / `+`

ID 对照

NCBI Gene ID	`LOC130989805`
GeneID	`130989805`
locus_tag	`-`
NCBI Name	`LOC130989805`
原始查询	`SmilChr06G003078`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tryptophan synthase beta type 2 [Source:NCBI gene (formerly Entrezgene);Acc:833841]; symbol=TSBtype2; hit=AT5G38530; species=arabidopsis; confidence=high
产物	tryptophan synthase beta type 2 [Source:NCBI gene (formerly Entrezgene);Acc:833841]; symbol=TSBtype2; hit=AT5G38530; species=arabidopsis; confidence=high
Arabidopsis	`AT5G38530` (TSBtype2) tryptophan synthase beta type 2 [Source:NCBI gene (formerly Entrezgene);Acc:833841] identity=81; qcov=0.849; evalue=0; confidence=high
Rice	`Os06g0632200` (TS) - identity=72.2; qcov=0.901; evalue=0; confidence=high
GO	GO:0000162 (L-tryptophan biosynthetic process); GO:0004834 (tryptophan synthase activity); GO:0030170 (pyridoxal phosphate binding); GO:0052684 (L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00291 (PALP)
InterPro	-
eggNOG	-
NR	GeneID:130989805

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057769886.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057769886.1`
3	Nucleus	细胞核	0.00000	`XP_057769886.1`
4	Chromosome	染色体	0.00000	`XP_057769886.1`
5	Centromere	着丝粒	0.00000	`XP_057769886.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43673655`	`A`	`AT`	1bp_insertion	frameshift_variant	27	A10,A13,A2,A7,B1,B108,B12,B35,B44,B77,B78,B81,B90,B92,B93,B97,C14,C2,C32,C54,C61,C68,C86,D10,D11,D2,D6
`Chr6:43673669`	`T`	`TGA`	2bp_insertion	frameshift_variant	20	B123,B131,B133,B14,B2,B22,B36,B56,B66,B68,B78,B82,B83,C28,C32,C57,C59,C72,C75,D5
`Chr6:43673682`	`AT`	`A`	1bp_deletion	frameshift_variant	60	A1,A9,B108,B117,B122,B123,B124,B128,B131,B132,B133,B137,B14,B2,B22,B23,B25,B26,B36,B45,B56,B57,B6,B66,B68,B78,B82,B83,B85,B87,B88,C1,C20,C26,C27,C28,C32,C4,C40,C42,C43,C47,C50,C56,C57,C58,C59,C64,C65,C66,C67,C7,C70,C72,C75,C76,C77,C83,C9,D5
`Chr6:43673692`	`G`	`GA`	1bp_insertion	frameshift_variant	18	B10,B117,B119,B129,B134,B60,B64,B82,B91,B97,C18,C41,C5,C56,C6,C7,D1,D3
`Chr6:43673735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B35,B97,C2,C32,C68
`Chr6:43673743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B108
`Chr6:43674044`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C27
`Chr6:43674044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr6:43674057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr6:43674100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr6:43674992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:43675069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769886.1

538 aa

269

538

PALP

PF00291 PALP 159-496 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769886.1`	Pfam	`PF00291`	PALP	Family	159	496	4e-38	132.1	Pyridoxal-phosphate dependent enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057913903.1
TGTTCGCAACATCTTGTCTGAGTTTGATTTCCTCATGCAATGCAACATTGGCGTCTCGCTCGCCGCCTCAACACCAACCCACTTTCTTTATTACTCAAATAAATGCTCTATTAAATACGATAAACGATTTTTCAACCTTTCATTTTTGGCAGAAATGGCGGAATCTTGTTTCCTTCCCTCCTCTCTCACACCAAGACTTCCCCTCAAAGGAGGTGAGCAATGGCGGATCTGTTTTGCCCCAAATATAAAGCCATCTCATT...

CDS

1 records

下载 CDS FASTA

LOC130989805
ATGCAATGCAACATTGGCGTCTCGCTCGCCGCCTCAACACCAACCCACTTTCTTTATTACTCAAATAAATGCTCTATTAAATACGATAAACGATTTTTCAACCTTTCATTTTTGGCAGAAATGGCGGAATCTTGTTTCCTTCCCTCCTCTCTCACACCAAGACTTCCCCTCAAAGGAGGTGAGCAATGGCGGATCTGTTTTGCCCCAAATATAAAGCCATCTCATTTGAGGCTTCCATCCAGCTCCAGAGTACAAGCCTA...

Protein

1 records

下载 Protein FASTA

XP_057769886.1
MQCNIGVSLAASTPTHFLYYSNKCSIKYDKRFFNLSFLAEMAESCFLPSSLTPRLPLKGGEQWRICFAPNIKPSHLRLPSSSRVQAYTADSRAIEIPNRWYNLIADLPVKPPPYLNPKTLEPVKPEDLSPLFPDELIKQEVSNERFIDIPEEVIDVYRLWRPTPLIRAKRLEKLLDTPARIYYKYEGGSPAGSHKPNTAVPQVWYNAKEGVKNLVTETGAGQWGSSLAFASSLFGLNCEVWQVRASYDQKPYRKLMMQTW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器