Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003080`

染色体: Chr06 坐标: 43683506-43687770 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003080`
名称	SmilChr06G003080
描述	probable 2-oxoglutarate-dependent dioxygenase At3g50210
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43683506 - 43687770 / `-`

ID 对照

NCBI Gene ID	`LOC130989807`
GeneID	`130989807`
locus_tag	`-`
NCBI Name	`LOC130989807`
原始查询	`SmilChr06G003080`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 2-oxoglutarate-dependent dioxygenase At3g50210
产物	probable 2-oxoglutarate-dependent dioxygenase At3g50210
Arabidopsis	`AT3G50210` (AT3G50210) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824183] identity=66.3; qcov=0.997; evalue=3.38e-168; confidence=high
Rice	`Os09g0245500` - identity=62.6; qcov=0.988; evalue=3.35e-156; confidence=high
GO	GO:0051213 (dioxygenase activity)
KEGG	-
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:130989807

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057769890.1`
2	Cytosol	细胞质基质	0.80000	`XP_057769890.1`
3	Nucleus	细胞核	0.00000	`XP_057769890.1`
4	Chromosome	染色体	0.00000	`XP_057769890.1`
5	Centromere	着丝粒	0.00000	`XP_057769890.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43683762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:43684148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B61,C22,C72
`Chr6:43684159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:43684313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:43684342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:43684352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:43684733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:43684857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr6:43687080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr6:43687127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769890.1

336 aa

168

336

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 8-136 aa PF03171 2OG-FeII_Oxy 202-290 aa

XP_057769891.1

336 aa

168

336

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 8-136 aa PF03171 2OG-FeII_Oxy 202-290 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769890.1`	Pfam	`PF14226`	DIOX_N	Family	8	136	2e-28	100.1	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057769890.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	202	290	1.5e-21	77.3	2OG-Fe(II) oxygenase superfamily
`XP_057769891.1`	Pfam	`PF14226`	DIOX_N	Family	8	136	2e-28	100.1	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057769891.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	202	290	1.5e-21	77.3	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913907.1
TTAATTTATCACAATTGCACGTTGCCCAAAAAAGTGGGGGTCCCACCGTGTCAGCCTGGTACTGCTCTGGACTATGGTGAGTATGATTCCCTTCTCATTTCCATTTCCATTTCCATTTCCATTTCCACGCAGTAAAGCTTTCTCCCCACCTCATTTCATTTCCCTTCTTCACATCAGTTCTGTAATCTCAATACAATCTATTTTCTCTGCATTGAGCTTTGGACATCACAAAATCCACTCTTTTAAGGTGTCAAATTTCC...

XM_057913908.1
TGGGGGTCCCACCGTGTCAGCCTGGTACTGCTCTGGACTATGGTGAGTATGATTCCCTTCTCATTTCCATTTCCATTTCCATTTCCATTTCCACGCAGTAAAGCTTTCTCCCCACCTCATTTCATTTCCCTTCTTCACATCAGTTCTGTAATCTCAATACAATCTATTTTCTCTGCATTGAGCTTTGGACATCACAAAATCCACTCTTTTAAGGTGTCAAATTTCCAGACGTCAGAGAAGAGCTGAGCTGAGCTGAGAAC...

CDS

2 records

下载 CDS FASTA

LOC130989807
ATGGCCACCAACTTCAGATCCATCCCGTTGATCGATATCAGTCCACTGGTGGAGAAATGGGACGATCCGAACCCGACCAGAGATGAAAGGGTTGCAGAAGTTGTTCGACAACTGGACAAAGCTTGTAGAGAAGCTGGCTTTTTTTACGTGACGGGCCATGAGATTCCAGATTCTATTGTGAAAGAAATCAGAAGCATATCTCGCCAGTTTTTCGATTTGCCATATGATGAGAAACTCAAAATAAAACTCTGTGCAGCAAC...

Protein

2 records

下载 Protein FASTA

XP_057769890.1
MATNFRSIPLIDISPLVEKWDDPNPTRDERVAEVVRQLDKACREAGFFYVTGHEIPDSIVKEIRSISRQFFDLPYDEKLKIKLCAATGYRGYQIVGENITKGVPDMHEAIDCYREVRPGMHGGLGEILEGCNQWPSDLPRFKNLMEDYVNRCTDLSRKILRGIALALGGPLDMFEGNIAGDPFWVLRIIGYPAVSHSNGKQMPDAQNDVGCGAHTDYGLLTLVNQDDDITALQVRNNDGEWIPAVPVPGTFVCNIGDMLK...

XP_057769891.1
MATNFRSIPLIDISPLVEKWDDPNPTRDERVAEVVRQLDKACREAGFFYVTGHEIPDSIVKEIRSISRQFFDLPYDEKLKIKLCAATGYRGYQIVGENITKGVPDMHEAIDCYREVRPGMHGGLGEILEGCNQWPSDLPRFKNLMEDYVNRCTDLSRKILRGIALALGGPLDMFEGNIAGDPFWVLRIIGYPAVSHSNGKQMPDAQNDVGCGAHTDYGLLTLVNQDDDITALQVRNNDGEWIPAVPVPGTFVCNIGDMLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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