Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003093`

染色体: Chr06 坐标: 43778665-43782104 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003093`
名称	SmilChr06G003093
描述	glucan endo-1,3-beta-D-glucosidase 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43778665 - 43782104 / `+`

ID 对照

NCBI Gene ID	`LOC130989819`
GeneID	`130989819`
locus_tag	`-`
NCBI Name	`LOC130989819`
原始查询	`SmilChr06G003093`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucan endo-1,3-beta-D-glucosidase 1
产物	glucan endo-1%2C3-beta-D-glucosidase 1
Arabidopsis	`AT5G15870` (AT5G15870) glycosyl hydrolase family 81 protein [Source:NCBI gene (formerly Entrezgene);Acc:831444] identity=65.8; qcov=1.03; evalue=0; confidence=high
Rice	`Os09g0379900` - identity=61.7; qcov=0.936; evalue=0; confidence=high
GO	GO:0052861 (endo-1,3(4)-beta-glucanase activity)
KEGG	-
Pfam	PF03639 (Glyco_hydro_81); PF17652 (Glyco_hydro81C)
InterPro	-
eggNOG	-
NR	GeneID:130989819

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.40000	`XP_057769908.1`
2	Cytoplasm	细胞质	0.20000	`XP_057769908.1`
3	Cell membrane	细胞膜	0.20000	`XP_057769908.1`
4	Vacuole	液泡	0.20000	`XP_057769908.1`
5	Nucleus	细胞核	0.00000	`XP_057769908.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43779987`	`GCC`	`G`	2bp_deletion	frameshift_variant	24	B109,B113,B13,B131,B136,B36,B41,B42,B51,B57,B66,B68,B71,C18,C3,C39,C53,C63,C64,C69,C78,C84,C9,D10
`Chr6:43779990`	`GC`	`G`	1bp_deletion	frameshift_variant	24	B109,B113,B13,B131,B136,B36,B41,B42,B51,B57,B66,B68,B71,C18,C3,C39,C53,C63,C64,C69,C78,C84,C9,D10
`Chr6:43780207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr6:43780246`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C77
`Chr6:43780246`	`TA`	`T`	1bp_deletion	CDS_variant	1	C77
`Chr6:43780261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:43780356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,C44
`Chr6:43780515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B8,C22,C37
`Chr6:43780580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B8,C22,C37
`Chr6:43780587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,C37,C40,C5,C9
`Chr6:43780638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr6:43780752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769908.1

729 aa

364

729

Glyco_hydro_81

Glyco_hydro81C

PF03639 Glyco_hydro_81 79-348 aa PF17652 Glyco_hydro81C 356-707 aa

XP_057769909.1

729 aa

364

729

Glyco_hydro_81

Glyco_hydro81C

PF03639 Glyco_hydro_81 79-348 aa PF17652 Glyco_hydro81C 356-707 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769908.1`	Pfam	`PF03639`	Glyco_hydro_81	Domain	79	348	1.3e-61	209.4	Glycosyl hydrolase family 81 N-terminal domain
`XP_057769908.1`	Pfam	`PF17652`	Glyco_hydro81C	Repeat	356	707	2.1e-102	343.7	Glycosyl hydrolase family 81 C-terminal domain
`XP_057769909.1`	Pfam	`PF03639`	Glyco_hydro_81	Domain	79	348	1.3e-61	209.4	Glycosyl hydrolase family 81 N-terminal domain
`XP_057769909.1`	Pfam	`PF17652`	Glyco_hydro81C	Repeat	356	707	2.1e-102	343.7	Glycosyl hydrolase family 81 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913925.1
GGACACAAACATTTAATCCCACTCACACGTTAAAGACATCTCAATTTCTATCTTCCTTTTGTTTTCTTCACAACTCTAAATCTTTTCTTGCCTAAGTTTTTTAGGTGAATGCCATACTTGCACCACAACTCTTATTTCTGCAGGTACCGACACATCCCCGCGTGGCGTAATTACTGGATAAATTTCCCGAAACTTAGCGCGAGTGACAATCGAGCCCCTCAACTTCCACCAAATTATATAAATAACCCCTGAAATTCAAA...

XM_057913926.1
GGACACAAACATTTAATCCCACTCACACGTTAAAGACATCTCAATTTCTATCTTCCTTTTGTTTTCTTCACAACTCTAAATCTTTTCTTGCCTAAGTTTTTTAGGTGAATGCCATACTTGCACCACAACTCTTATTTCTGTACCGACACATCCCCGCGTGGCGTAATTACTGGATAAATTTCCCGAAACTTAGCGCGAGTGACAATCGAGCCCCTCAACTTCCACCAAATTATATAAATAACCCCTGAAATTCAAATGCT...

CDS

2 records

下载 CDS FASTA

LOC130989819
ATGCTGAGGAAGATCAAACGAAGAGTCAAAACCGTTATAACGAAGCCTTTCAACAAGAAAAGGCGACCAAAAAAGCCGCCATCGGCACCGCCCACTCCCTCCCCTTCGCCGCCCATGTCGCCGCCGCCGCCATCATCACCCGCCAAGCTCCACCGATCCCGCCCCTTCATCTTCCCCCAAACTCACTCCGCCGTCCTCCCCGACCCCTCCCGATTCTTCGCCCCCCACCTCCTCGCCGCCCCTCTCCCCACCAACTCCTT...

Protein

2 records

下载 Protein FASTA

XP_057769908.1
MLRKIKRRVKTVITKPFNKKRRPKKPPSAPPTPSPSPPMSPPPPSSPAKLHRSRPFIFPQTHSAVLPDPSRFFAPHLLAAPLPTNSFFQNFALKNGDQPEYIHPYLIKSSQSSLTLCYPSLFTNPAFIYQVFVADLTISTLNNPNPSSTHVISSFSDLGVTLDFPSNNLRFFLVRGSPYLTCSVLSAVCLSISTIHAVLELTPNSSCTKYTIRLNNNQTWLLYASSPVNLSHDINMITSSTVFSGVIRIAALPVASPKFE...

XP_057769909.1
MLRKIKRRVKTVITKPFNKKRRPKKPPSAPPTPSPSPPMSPPPPSSPAKLHRSRPFIFPQTHSAVLPDPSRFFAPHLLAAPLPTNSFFQNFALKNGDQPEYIHPYLIKSSQSSLTLCYPSLFTNPAFIYQVFVADLTISTLNNPNPSSTHVISSFSDLGVTLDFPSNNLRFFLVRGSPYLTCSVLSAVCLSISTIHAVLELTPNSSCTKYTIRLNNNQTWLLYASSPVNLSHDINMITSSTVFSGVIRIAALPVASPKFE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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