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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003102

染色体: Chr06 坐标: 43865638-43871940 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003102
名称SmilChr06G003102
描述uncharacterized SmilChr06G003102
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向43865638 - 43871940 / +

ID 对照

NCBI Gene IDLOC130989828
GeneID130989828
locus_tag-
NCBI NameLOC130989828
原始查询SmilChr06G003102

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述DNA topoisomerase, type IA, core [Source:NCBI gene (formerly Entrezgene);Acc:829248]; symbol=AT4G31210; hit=AT4G31210; species=arabidopsis; confidence=high
产物DNA topoisomerase, type IA, core [Source:NCBI gene (formerly Entrezgene);Acc:829248]; symbol=AT4G31210; hit=AT4G31210; species=arabidopsis; confidence=high
ArabidopsisAT4G31210 (AT4G31210)
DNA topoisomerase, type IA, core [Source:NCBI gene (formerly Entrezgene);Acc:829248]
identity=64.9; qcov=0.804; evalue=0; confidence=high
RiceOs06g0281400
-
identity=65.4; qcov=0.544; evalue=0; confidence=medium
GOGO:0003677 (DNA binding); GO:0003917 (DNA topoisomerase type I (single strand cut, ATP-independent) activity); GO:0005694 (chromosome); GO:0006265 (DNA topological change)
KEGG-
PfamPF01131 (Topoisom_bac); PF01396 (Zn_ribbon_Top1); PF01751 (Toprim); PF13368 (Toprim_C_rpt)
InterPro-
eggNOG-
NRGeneID:130989828

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057769927.1
2 Mitochondrion 线粒体 0.40000 XP_057769927.1
3 Chloroplast stroma 叶绿体基质 0.20000 XP_057769927.1
4 Nucleus 细胞核 0.00000 XP_057769927.1
5 Chromosome 染色体 0.00000 XP_057769927.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:43866365 C T EMS_canonical_SNV CDS_variant 5 A11,B1,B77,C82,C87
Chr6:43867079 G A EMS_canonical_SNV CDS_variant 1 B71
Chr6:43867320 G A EMS_canonical_SNV CDS_variant 2 A21,B28
Chr6:43867341 G A EMS_canonical_SNV CDS_variant 3 A18,A19,C71
Chr6:43867838 G A EMS_canonical_SNV CDS_variant 4 B114,B32,B95,C37
Chr6:43867927 G A EMS_canonical_SNV CDS_variant 1 A18
Chr6:43868065 C T EMS_canonical_SNV CDS_variant 4 B124,B97,C78,D2
Chr6:43868196 G A EMS_canonical_SNV CDS_variant 4 B114,B37,B95,C37
Chr6:43868422 G A EMS_canonical_SNV CDS_variant 1 A18
Chr6:43868573 C T EMS_canonical_SNV CDS_variant 2 B108,B93
Chr6:43868705 C T EMS_canonical_SNV CDS_variant 4 B100,B15,C21,D7
Chr6:43868813 G A EMS_canonical_SNV CDS_variant 2 B4,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769927.1
1137 aa
N
1
568
1137
Toprim
Topoisom_bac
Zn_ribbon_Top1
Toprim_C_rpt
C
PF01751 Toprim 332-445 aa PF01131 Topoisom_bac 460-901 aa PF01396 Zn_ribbon_Top1 944-979 aa PF13368 Toprim_C_rpt 1008-1069 aa
XP_057769928.1
1137 aa
N
1
568
1137
Toprim
Topoisom_bac
Zn_ribbon_Top1
Toprim_C_rpt
C
PF01751 Toprim 332-445 aa PF01131 Topoisom_bac 460-901 aa PF01396 Zn_ribbon_Top1 944-979 aa PF13368 Toprim_C_rpt 1008-1069 aa
XP_057769929.1
1135 aa
N
1
568
1135
Toprim
Topoisom_bac
Zn_ribbon_Top1
Toprim_C_rpt
C
PF01751 Toprim 330-443 aa PF01131 Topoisom_bac 458-899 aa PF01396 Zn_ribbon_Top1 942-977 aa PF13368 Toprim_C_rpt 1006-1067 aa
XP_057769931.1
1135 aa
N
1
568
1135
Toprim
Topoisom_bac
Zn_ribbon_Top1
Toprim_C_rpt
C
PF01751 Toprim 330-443 aa PF01131 Topoisom_bac 458-899 aa PF01396 Zn_ribbon_Top1 942-977 aa PF13368 Toprim_C_rpt 1006-1067 aa
XP_057769932.1
1135 aa
N
1
568
1135
Toprim
Topoisom_bac
Zn_ribbon_Top1
Toprim_C_rpt
C
PF01751 Toprim 330-443 aa PF01131 Topoisom_bac 458-899 aa PF01396 Zn_ribbon_Top1 942-977 aa PF13368 Toprim_C_rpt 1006-1067 aa
XP_057769933.1
1133 aa
N
1
566
1133
Toprim
Topoisom_bac
Zn_ribbon_Top1
Toprim_C_rpt
C
PF01751 Toprim 328-441 aa PF01131 Topoisom_bac 456-897 aa PF01396 Zn_ribbon_Top1 940-975 aa PF13368 Toprim_C_rpt 1004-1065 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769927.1 Pfam PF01751 Toprim Family 332 445 9.9e-18 64.8 Toprim domain
XP_057769927.1 Pfam PF01131 Topoisom_bac Family 460 901 9.1e-111 371.5 DNA topoisomerase
XP_057769927.1 Pfam PF01396 Zn_ribbon_Top1 Domain 944 979 5.9e-09 36.3 Topoisomerase DNA binding C4 zinc finger
XP_057769927.1 Pfam PF13368 Toprim_C_rpt Domain 1008 1069 8e-16 58.4 Topoisomerase C-terminal repeat
XP_057769928.1 Pfam PF01751 Toprim Family 332 445 9.9e-18 64.8 Toprim domain
XP_057769928.1 Pfam PF01131 Topoisom_bac Family 460 901 9.1e-111 371.5 DNA topoisomerase
XP_057769928.1 Pfam PF01396 Zn_ribbon_Top1 Domain 944 979 5.9e-09 36.3 Topoisomerase DNA binding C4 zinc finger
XP_057769928.1 Pfam PF13368 Toprim_C_rpt Domain 1008 1069 8e-16 58.4 Topoisomerase C-terminal repeat
XP_057769929.1 Pfam PF01751 Toprim Family 330 443 9.8e-18 64.8 Toprim domain
XP_057769929.1 Pfam PF01131 Topoisom_bac Family 458 899 9e-111 371.5 DNA topoisomerase
XP_057769929.1 Pfam PF01396 Zn_ribbon_Top1 Domain 942 977 5.9e-09 36.3 Topoisomerase DNA binding C4 zinc finger
XP_057769929.1 Pfam PF13368 Toprim_C_rpt Domain 1006 1067 8e-16 58.4 Topoisomerase C-terminal repeat
XP_057769931.1 Pfam PF01751 Toprim Family 330 443 1e-17 64.8 Toprim domain
XP_057769931.1 Pfam PF01131 Topoisom_bac Family 458 899 9e-111 371.5 DNA topoisomerase
XP_057769931.1 Pfam PF01396 Zn_ribbon_Top1 Domain 942 977 5.8e-09 36.3 Topoisomerase DNA binding C4 zinc finger
XP_057769931.1 Pfam PF13368 Toprim_C_rpt Domain 1006 1067 7.9e-16 58.4 Topoisomerase C-terminal repeat
XP_057769932.1 Pfam PF01751 Toprim Family 330 443 1e-17 64.8 Toprim domain
XP_057769932.1 Pfam PF01131 Topoisom_bac Family 458 899 9e-111 371.5 DNA topoisomerase
XP_057769932.1 Pfam PF01396 Zn_ribbon_Top1 Domain 942 977 5.8e-09 36.3 Topoisomerase DNA binding C4 zinc finger
XP_057769932.1 Pfam PF13368 Toprim_C_rpt Domain 1006 1067 7.9e-16 58.4 Topoisomerase C-terminal repeat
XP_057769933.1 Pfam PF01751 Toprim Family 328 441 9.9e-18 64.8 Toprim domain
XP_057769933.1 Pfam PF01131 Topoisom_bac Family 456 897 9e-111 371.5 DNA topoisomerase
XP_057769933.1 Pfam PF01396 Zn_ribbon_Top1 Domain 940 975 5.8e-09 36.3 Topoisomerase DNA binding C4 zinc finger
XP_057769933.1 Pfam PF13368 Toprim_C_rpt Domain 1004 1065 7.9e-16 58.4 Topoisomerase C-terminal repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057913945.1
AACGAATCAAAAAAAAAAAAAAGTGCCGCCGTCATCTTCTATTCTTCTCCCCTTCCAATTCCATAAACCCCTAATCCTCACCTGAAACCCCTACCACACTAGTACCATTACGGCATTACAAGTTAAACAACCCAGCCGCCACCGCCGCCTCTCCTCCGCCGGCCCCCCGTGCCCAGCCAGAAGAGCCCGCAGGCCGCAGCCGCCTCGCCCAGCGCCGCAAGCACGCAGGACCAGCTCTGCTCTGCGCCGCGCCTGACCCC...
XM_057913949.1
AACGAATCAAAAAAAAAAAAAAGTGCCGCCGTCATCTTCTATTCTTCTCCCCTTCCAATTCCATAAACCCCTAATCCTCACCTGAAACCCCTACCACACTAGTACCATTACGGCATTACAAGTTAAACAACCCAGCCGCCACCGCCGCCTCTCCTCCGCCGGCCCCCCGTGCCCAGCCAGAAGAGCCCGCAGGCCGCAGCCGCCTCGCCCAGCGCCGCAAGCACGCAGGACCAGCTCTGCTCTGCGCCGCGCCTGACCCC...

CDS

6 records

下载 CDS FASTA
LOC130989828
ATGGATGCAGCAGTAGCGAAGGTTATGGGCATGACATGGTATCGTGGTCAATTTTCCCAGTTGCAGAACCGGGCATTTAGAAGTTGCCAACCTCGAATCTGTTTAAAGTGTCCATCTGTACAGGCTGACAGATCCAAATGTTCTTCCATGAGAGCTGGGATATCATGTACTCTGAAATTAAAGTCAGTATATCCACTACAAAGTTGTGCTAGGGTTCCATCCTCTTTCTCTACCTCTAGAGCCATGACACCTTTTGGATG...
LOC130989828
ATGGATGCAGCAGTAGCGAAGGTTATGGGCATGACATGGTATCGTGGTCAATTTTCCCAGTTGCAGAACCGGGCATTTAGAAGTTGCCAACCTCGAATCTGTTTAAAGTGTCCATCTGTACAGGCTGACAGATCCAAATGTTCTTCCATGAGAGCTGGGATATCATGTACTCTGAAATTAAAGTCAGTATATCCACTACAAAGTTGTGCTAGGGTTCCATCCTCTTTCTCTACCTCTAGAGCCATGACACCTTTTGGATG...

Protein

6 records

下载 Protein FASTA
XP_057769927.1
MDAAVAKVMGMTWYRGQFSQLQNRAFRSCQPRICLKCPSVQADRSKCSSMRAGISCTLKLKSVYPLQSCARVPSSFSTSRAMTPFGCELSNSGMPTNVSFYGLVGRPWPTCYASSSISRSYSQIAKASTRNRIITMEGGSSGKNSPVNTFNKRRKSPKAFAAQKGNAASKEELAVSSSSGKSAAVEYDDPSSLKDQIVKDKKNSIVDNGGREKLKRSRKNKTQSQSSSVSASTEAAEMPDSSTNISGAKEIGKSKSKSKQ...
XP_057769928.1
MDAAVAKVMGMTWYRGQFSQLQNRAFRSCQPRICLKCPSVQADRSKCSSMRAGISCTLKLKSVYPLQSCARVPSSFSTSRAMTPFGCELSNSGMPTNVSFYGLVGRPWPTCYASSSISRSYSQIAKASTRNRIITMEGGSSGKNSPVNTFNKRRKSPKAFAAQKGNAASKEELAVSSSSGKSAAVEYDDPSSLKDQIVKDKKNSIVDNGGREKLKRSRKNKTQSQSSSVSASTEAAEMPDSSTNISGAKEIGKSKSKSKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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