当前解析结果
SmilChr06G003114| 统一新 Gene ID | SmilChr06G003114 |
|---|---|
| 名称 | SmilChr06G003114 |
| 描述 | ABC transporter B family member 19-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43993444 - 43995814 / - |
| NCBI Gene ID | LOC130989841 |
|---|---|
| GeneID | 130989841 |
| locus_tag | - |
| NCBI Name | LOC130989841 |
| 原始查询 | SmilChr06G003114 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 19-like |
| 产物 | ABC transporter B family member 19-like |
| Arabidopsis | AT3G28860 (ABCB19)ATP binding cassette subfamily B19 [Source:NCBI gene (formerly Entrezgene);Acc:822519] identity=64.1; qcov=0.792; evalue=1.17e-36; confidence=medium |
| Rice | Os04g0642000 (OsABCB16)- identity=57.5; qcov=0.723; evalue=4.96e-28; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989841 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057769952.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057769952.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769952.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769952.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769952.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43993543 |
AG |
A |
1bp_deletion | frameshift_variant | 38 | A10,A11,A13,A19,A23,A24,A8,B1,B106,B107,B11,B114,B121,B128,B130,B133,B139,B17,B24,B25,B37,B44,B6,B70,B81,B88,B92,B93,C24,C27,C30,C38,C41,C48,C66,C75,C87,D10 |
Chr6:43993583 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C22 |
Chr6:43993583 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C22 |
Chr6:43993587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B121,C38,C87 |
Chr6:43993617 |
TA |
T |
1bp_deletion | frameshift_variant | 4 | B32,C1,C14,C19 |
Chr6:43993617 |
TA |
T |
1bp_deletion | CDS_variant | 4 | B32,C1,C14,C19 |
Chr6:43993630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:43993888 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | A16,B130,C65 |
Chr6:43993888 |
GA |
G |
1bp_deletion | CDS_variant | 3 | A16,B130,C65 |
Chr6:43994044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B76,B84,C39,C45 |
Chr6:43994065 |
G |
GT |
1bp_insertion | frameshift_variant | 8 | A25,B2,B71,B80,C29,C36,C63,D3 |
Chr6:43994087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。