当前解析结果
SmilChr06G003119| 统一新 Gene ID | SmilChr06G003119 |
|---|---|
| 名称 | SmilChr06G003119 |
| 描述 | serine/threonine receptor-like kinase NFP |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 44015565 - 44018263 / - |
| NCBI Gene ID | LOC130989845 |
|---|---|
| GeneID | 130989845 |
| locus_tag | - |
| NCBI Name | LOC130989845 |
| 原始查询 | SmilChr06G003119 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine receptor-like kinase NFP |
| 产物 | serine/threonine receptor-like kinase NFP |
| Arabidopsis | AT2G33580 (LYK5)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817923] identity=30.2; qcov=1.02; evalue=2.4e-68; confidence=low |
| Rice | Os03g0233300 (OsLysM-RLK2)- identity=40.9; qcov=0.959; evalue=5.02e-128; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF23446 (LysM1_NFP_LYK); PF23457 (LysM2_NFP); PF23462 (LysM3_NFP); PF23472 (LysM2_CERK1_LYK3_4_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769956.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769956.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769956.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769956.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769956.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:44015964 |
CGT |
C |
2bp_deletion | frameshift_variant | 1 | B95 |
Chr6:44015964 |
CGT |
C |
2bp_deletion | CDS_variant | 1 | B95 |
Chr6:44015994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B27,B7,C77 |
Chr6:44015995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:44016068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr6:44016217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr6:44016261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr6:44016310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B33,B53,B80,C56,C65 |
Chr6:44016370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B123 |
Chr6:44016474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B27,B7,C77 |
Chr6:44016492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B33,B53,B80,C56,C65 |
Chr6:44016562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769956.1PF23446
LysM1_NFP_LYK 38-95 aa
PF23457
LysM2_NFP 99-153 aa
PF23472
LysM2_CERK1_LYK3_4_5 100-153 aa
PF23462
LysM3_NFP 166-213 aa
PF00069
Pkinase 342-467 aa
PF07714
PK_Tyr_Ser-Thr 347-467 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769956.1 |
Pfam | PF23446 |
LysM1_NFP_LYK | Domain | 38 | 95 | 9.8e-20 | 71.9 | NFP/LYK LysM1 domain |
XP_057769956.1 |
Pfam | PF23457 |
LysM2_NFP | Domain | 99 | 153 | 1e-22 | 80.7 | NFP LysM2 domain |
XP_057769956.1 |
Pfam | PF23472 |
LysM2_CERK1_LYK3_4_5 | Domain | 100 | 153 | 1.5e-08 | 35.1 | LYK3/4/5 LysM2 domain |
XP_057769956.1 |
Pfam | PF23462 |
LysM3_NFP | Domain | 166 | 213 | 2.7e-24 | 86.1 | NFP LysM3 domain |
XP_057769956.1 |
Pfam | PF00069 |
Pkinase | Domain | 342 | 467 | 1.2e-21 | 78.1 | Protein kinase domain |
XP_057769956.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 347 | 467 | 7.9e-26 | 91.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。