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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003124

染色体: Chr06 坐标: 44093385-44105512 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003124
名称SmilChr06G003124
描述histone-lysine N-methyltransferase SUVR5
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向44093385 - 44105512 / -

ID 对照

NCBI Gene IDLOC130989850
GeneID130989850
locus_tag-
NCBI NameLOC130989850
原始查询SmilChr06G003124

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述histone-lysine N-methyltransferase SUVR5
产物histone-lysine N-methyltransferase SUVR5
ArabidopsisAT2G23740 (SUVR5)
histone-lysine N-methyltransferase SUVR5 [Source:NCBI gene (formerly Entrezgene);Acc:816905]
identity=48.6; qcov=0.939; evalue=0; confidence=high
RiceOs02g0708600 (OsSET11)
-
identity=47.8; qcov=0.383; evalue=7.3e-173; confidence=low
GOGO:0005515 (protein binding); GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0034968 (GO:0034968); GO:0042054 (histone methyltransferase activity)
KEGG-
PfamPF00856 (SET); PF05033 (Pre-SET); PF18868 (zf-C2H2_3rep); PF26734 (SUVR5_N)
InterPro-
eggNOG-
NRGeneID:130989850

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769965.1
2 Chromosome 染色体 0.00000 XP_057769965.1
3 Centromere 着丝粒 0.00000 XP_057769965.1
4 Chromatin 染色质 0.00000 XP_057769965.1
5 Telomere 端粒 0.00000 XP_057769965.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:44094424 C T EMS_canonical_SNV CDS_variant 1 C35
Chr6:44095239 C T EMS_canonical_SNV CDS_variant 1 A19
Chr6:44095486 G A EMS_canonical_SNV CDS_variant 2 C13,C37
Chr6:44095842 G A EMS_canonical_SNV CDS_variant 3 A10,B114,C63
Chr6:44095851 G A EMS_canonical_SNV CDS_variant 1 D10
Chr6:44095878 G A EMS_canonical_SNV CDS_variant 2 C49,C54
Chr6:44096456 G A EMS_canonical_SNV CDS_variant 4 A5,C2,C42,C62
Chr6:44097219 G A EMS_canonical_SNV CDS_variant 1 C35
Chr6:44097455 C T EMS_canonical_SNV CDS_variant 4 A13,B113,B25,C3
Chr6:44097919 G GA 1bp_insertion frameshift_variant 3 B54,B96,C53
Chr6:44097919 G GA 1bp_insertion CDS_variant 3 B54,B96,C53
Chr6:44098138 C T EMS_canonical_SNV CDS_variant 1 C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769965.1
1487 aa
N
1
744
1487
SUVR5_N
zf-C2H2_3rep
Pre-SET
SET
C
PF26734 SUVR5_N 143-224 aa PF18868 zf-C2H2_3rep 844-966 aa PF05033 Pre-SET 1198-1324 aa PF00856 SET 1343-1463 aa
XP_057769966.1
1487 aa
N
1
744
1487
SUVR5_N
zf-C2H2_3rep
Pre-SET
SET
C
PF26734 SUVR5_N 143-224 aa PF18868 zf-C2H2_3rep 844-966 aa PF05033 Pre-SET 1198-1324 aa PF00856 SET 1343-1463 aa
XP_057769967.1
1487 aa
N
1
744
1487
SUVR5_N
zf-C2H2_3rep
Pre-SET
SET
C
PF26734 SUVR5_N 143-224 aa PF18868 zf-C2H2_3rep 844-966 aa PF05033 Pre-SET 1198-1324 aa PF00856 SET 1343-1463 aa
XP_057769968.1
1487 aa
N
1
744
1487
SUVR5_N
zf-C2H2_3rep
Pre-SET
SET
C
PF26734 SUVR5_N 143-224 aa PF18868 zf-C2H2_3rep 844-966 aa PF05033 Pre-SET 1198-1324 aa PF00856 SET 1343-1463 aa
XP_057769969.1
1487 aa
N
1
744
1487
SUVR5_N
zf-C2H2_3rep
Pre-SET
SET
C
PF26734 SUVR5_N 143-224 aa PF18868 zf-C2H2_3rep 844-966 aa PF05033 Pre-SET 1198-1324 aa PF00856 SET 1343-1463 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769965.1 Pfam PF26734 SUVR5_N Domain 143 224 4.9e-44 149.0 SUVR5 N-terminal domain
XP_057769965.1 Pfam PF18868 zf-C2H2_3rep Domain 844 966 3e-60 203.1 Zinc finger C2H2-type, 3 repeats
XP_057769965.1 Pfam PF05033 Pre-SET Family 1198 1324 2.1e-14 54.7 Pre-SET motif
XP_057769965.1 Pfam PF00856 SET Family 1343 1463 2e-22 80.3 SET domain
XP_057769966.1 Pfam PF26734 SUVR5_N Domain 143 224 4.9e-44 149.0 SUVR5 N-terminal domain
XP_057769966.1 Pfam PF18868 zf-C2H2_3rep Domain 844 966 3e-60 203.1 Zinc finger C2H2-type, 3 repeats
XP_057769966.1 Pfam PF05033 Pre-SET Family 1198 1324 2.1e-14 54.7 Pre-SET motif
XP_057769966.1 Pfam PF00856 SET Family 1343 1463 2e-22 80.3 SET domain
XP_057769967.1 Pfam PF26734 SUVR5_N Domain 143 224 4.9e-44 149.0 SUVR5 N-terminal domain
XP_057769967.1 Pfam PF18868 zf-C2H2_3rep Domain 844 966 3e-60 203.1 Zinc finger C2H2-type, 3 repeats
XP_057769967.1 Pfam PF05033 Pre-SET Family 1198 1324 2.1e-14 54.7 Pre-SET motif
XP_057769967.1 Pfam PF00856 SET Family 1343 1463 2e-22 80.3 SET domain
XP_057769968.1 Pfam PF26734 SUVR5_N Domain 143 224 4.9e-44 149.0 SUVR5 N-terminal domain
XP_057769968.1 Pfam PF18868 zf-C2H2_3rep Domain 844 966 3e-60 203.1 Zinc finger C2H2-type, 3 repeats
XP_057769968.1 Pfam PF05033 Pre-SET Family 1198 1324 2.1e-14 54.7 Pre-SET motif
XP_057769968.1 Pfam PF00856 SET Family 1343 1463 2e-22 80.3 SET domain
XP_057769969.1 Pfam PF26734 SUVR5_N Domain 143 224 4.9e-44 149.0 SUVR5 N-terminal domain
XP_057769969.1 Pfam PF18868 zf-C2H2_3rep Domain 844 966 3e-60 203.1 Zinc finger C2H2-type, 3 repeats
XP_057769969.1 Pfam PF05033 Pre-SET Family 1198 1324 2.1e-14 54.7 Pre-SET motif
XP_057769969.1 Pfam PF00856 SET Family 1343 1463 2e-22 80.3 SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XR_009090763.1
CAATTCTTTTTCCTGCTGCCCTCTGTAATTTGTAAACATACATAGATGTGTATCTATCTATCTATTATGTGTAACAACATGTTTCATGGCAAAATTGGCATATAGCACCAGCCGTGACCTAGCTATACTGTTGTCTTTTTAATTACCCATATTAGGAAAAATATCAGTTGAATCACTCTTGTTGCTTGGTTAATTAAAATTCGTTTCTTGCTTAATTATGTTAGTTTCTGGTTTGAATTGTTTTCTTGTAGATTGTAAAT...
XM_057913983.1
TCCCCCTTTCTGCGCATTTAATTTCGATTTTGCCCTACCAAACCAAATTTCTCTTCTCTAATCTTCACCCCTCACTGGCTTCAATCTTTAATAATTTTTCTTTTCTCAATTGGACCTGTTACACACATATCGATACATATACATACACCTCGTTCCATATTCCCCAGCCAAAAAATAAATAAAAAATCTGGTCACTCATGCCATCCACATCTTTACCAGTTTTTATTAATACAATTCCTAGTCGTCAATTAATTGACACA...

CDS

5 records

下载 CDS FASTA
LOC130989850
ATGGAAGTGCTTCCATGTTCTGGTGCTCATCATGTTGGAGAGTCTGATTGCCCTAAACCAGAACAAGAAGCAGCTTTTAAGGATGATGGTGCAGATTATGTTAGAACGGATCTCAAATTTGATGACTTAACTCTTACTGTTGGAGAATCTCATGAAGTAAGAGAAGATGGAGGTCGGTTTACACTAGAGGGTTTCCCTACTTTAGATGGCGGCTCTAATGAGGATACATACTTTGATTATGAAATTGATGGTCAAACTCT...
LOC130989850
ATGGAAGTGCTTCCATGTTCTGGTGCTCATCATGTTGGAGAGTCTGATTGCCCTAAACCAGAACAAGAAGCAGCTTTTAAGGATGATGGTGCAGATTATGTTAGAACGGATCTCAAATTTGATGACTTAACTCTTACTGTTGGAGAATCTCATGAAGTAAGAGAAGATGGAGGTCGGTTTACACTAGAGGGTTTCCCTACTTTAGATGGCGGCTCTAATGAGGATACATACTTTGATTATGAAATTGATGGTCAAACTCT...

Protein

5 records

下载 Protein FASTA
XP_057769965.1
MEVLPCSGAHHVGESDCPKPEQEAAFKDDGADYVRTDLKFDDLTLTVGESHEVREDGGRFTLEGFPTLDGGSNEDTYFDYEIDGQTLSCYSHDSEDDNFEKIDHFAEPCLTLENSHLISNTIEGGVSNDHQEGSPHFEIKGLDEPQAVWVKWRGQWQSGIRCARTDWPLSTLKAKPTHDRKQYLVIFFPRTRNYSWADVQLVRPINEFPNPIAYKTHQVGIKMVEDLTLAHRFIMQKLAVGMLNILDQLNREALIESARD...
XP_057769966.1
MEVLPCSGAHHVGESDCPKPEQEAAFKDDGADYVRTDLKFDDLTLTVGESHEVREDGGRFTLEGFPTLDGGSNEDTYFDYEIDGQTLSCYSHDSEDDNFEKIDHFAEPCLTLENSHLISNTIEGGVSNDHQEGSPHFEIKGLDEPQAVWVKWRGQWQSGIRCARTDWPLSTLKAKPTHDRKQYLVIFFPRTRNYSWADVQLVRPINEFPNPIAYKTHQVGIKMVEDLTLAHRFIMQKLAVGMLNILDQLNREALIESARD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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