Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003176`

染色体: Chr06 坐标: 44689579-44695390 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003176`
名称	SmilChr06G003176
描述	uncharacterized SmilChr06G003176
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44689579 - 44695390 / `+`

ID 对照

NCBI Gene ID	`LOC130989886`
GeneID	`130989886`
locus_tag	`-`
NCBI Name	`LOC130989886`
原始查询	`SmilChr06G003176`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Prolyl oligopeptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836830]; symbol=AT5G66960; hit=AT5G66960; species=arabidopsis; confidence=high
产物	Prolyl oligopeptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836830]; symbol=AT5G66960; hit=AT5G66960; species=arabidopsis; confidence=high
Arabidopsis	`AT5G66960` (AT5G66960) Prolyl oligopeptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836830] identity=70.1; qcov=1; evalue=0; confidence=high
Rice	`Os09g0475700` (OsPOP19) - identity=40.4; qcov=0.998; evalue=8.48e-159; confidence=medium
GO	GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF02897 (Peptidase_S9_N)
InterPro	-
eggNOG	-
NR	GeneID:130989886

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057770021.1`
2	Mitochondrion	线粒体	0.80000	`XP_057770020.1`
3	Cytoplasm	细胞质	0.80000	`XP_057770021.1`
4	Chloroplast	叶绿体	0.40000	`XP_057770020.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057770021.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44689725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr6:44689996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr6:44690767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr6:44691200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B13
`Chr6:44691303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr6:44691361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr6:44692144`	`TTC`	`T`	2bp_deletion	frameshift_variant	1	C9
`Chr6:44692144`	`TTC`	`T`	2bp_deletion	CDS_variant	1	C9
`Chr6:44692240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C41
`Chr6:44692915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B55,B72,B81
`Chr6:44693027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B140
`Chr6:44693050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,C77,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770020.1

788 aa

394

788

Peptidase_S9_N

Peptidase_S9

PF02897 Peptidase_S9_N 45-476 aa PF00326 Peptidase_S9 574-742 aa

XP_057770021.1

659 aa

330

659

Peptidase_S9_N

Abhydrolase_1

Peptidase_S9

PF02897 Peptidase_S9_N 2-347 aa PF00561 Abhydrolase_1 428-545 aa PF00326 Peptidase_S9 445-613 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770020.1`	Pfam	`PF02897`	Peptidase_S9_N	Repeat	45	476	3.4e-45	155.3	Prolyl oligopeptidase, N-terminal beta-propeller domain
`XP_057770020.1`	Pfam	`PF00326`	Peptidase_S9	Domain	574	742	2.1e-33	116.4	Prolyl oligopeptidase family
`XP_057770021.1`	Pfam	`PF02897`	Peptidase_S9_N	Repeat	2	347	1.5e-25	90.6	Prolyl oligopeptidase, N-terminal beta-propeller domain
`XP_057770021.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	428	545	4.1e-06	27.3	alpha/beta hydrolase fold
`XP_057770021.1`	Pfam	`PF00326`	Peptidase_S9	Domain	445	613	1.8e-33	116.6	Prolyl oligopeptidase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914037.1
AAAAAAATACAAAACCGGCATGTTAAACCCCACGGCGGCCGTTTCCCCTAAACCCTCTTTTCCCGACCATCAGCCACCATGCGGCACCTCCTCACCGCCTTGCGCCGCCCTCTCCGCCCCTGCGCCATTCTCCAAAGGGCGAATTACAAGCCGCAGAATCCCCAGCCGCCTCCTTCCCCGCCGTCGCTGCCGAAGCCCCCGAAGAAGCCAGTGAGTTTCTCCCTGCACGGGGAGTCGTGGTCGGACGACTATAACTGGAT...

XM_057914038.1
TCTACATGGAGCAGGAGGAGAAGTACACCGAAGCCGTCATGTCCGACACCGATCGCCTCCAGTCCAAGCTCCATTCCGAGATGGCCTCCCGCTTCGCCGCCGACCTCGCCACTCCTCCCCTCCGTTGGGGTCCTTGCACAGGTTGTACTACAGGCGGGTTGAAGAAGGAATGCAATACCCGGTATTATGTAGGAGACTGGCTAGTCTTAATGAAGAGTTTATTTCTAATAAATCTCCATCAGCTGGCTTTGATTTCATGT...

CDS

2 records

下载 CDS FASTA

LOC130989886
ATGCGGCACCTCCTCACCGCCTTGCGCCGCCCTCTCCGCCCCTGCGCCATTCTCCAAAGGGCGAATTACAAGCCGCAGAATCCCCAGCCGCCTCCTTCCCCGCCGTCGCTGCCGAAGCCCCCGAAGAAGCCAGTGAGTTTCTCCCTGCACGGGGAGTCGTGGTCGGACGACTATAACTGGATGTCGCAGCTCAGCGACAAGGTGGCGATGCGCCACATGGACGTCTACATGGAGCAGGAGGAGAAGTACACCGAAGCCGT...

LOC130989886
ATGCAATACCCGGTATTATGTAGGAGACTGGCTAGTCTTAATGAAGAGTTTATTTCTAATAAATCTCCATCAGCTGGCTTTGATTTCATGTCTGGAAAGAAAATTGAGCAGAAGCTGCTTGACTACAACAAAGAAGCTGAAAGATTTGGAGGTTATGCCTATGAAGAACTATCAGAAGTCTCACCTGATCACCGATATCTTGCATACAGTATGTATGACAAGGATAATGACCACTTCAAACTATCTGTCAGAGACTTGAA...

Protein

2 records

下载 Protein FASTA

XP_057770020.1
MRHLLTALRRPLRPCAILQRANYKPQNPQPPPSPPSLPKPPKKPVSFSLHGESWSDDYNWMSQLSDKVAMRHMDVYMEQEEKYTEAVMSDTDRLQSKLHSEMASRFAADLATPPLRWGPWLYYRRVEEGMQYPVLCRRLASLNEEFISNKSPSAGFDFMSGKKIEQKLLDYNKEAERFGGYAYEELSEVSPDHRYLAYSMYDKDNDHFKLSVRDLNSGSLCIKPQADRVSGIAWAKNGQALLYAVTDDKKRPFRIYCSML...

XP_057770021.1
MQYPVLCRRLASLNEEFISNKSPSAGFDFMSGKKIEQKLLDYNKEAERFGGYAYEELSEVSPDHRYLAYSMYDKDNDHFKLSVRDLNSGSLCIKPQADRVSGIAWAKNGQALLYAVTDDKKRPFRIYCSMLGSDTEDVIIMEEPQENVHLNIRHTKDFQFLTVNAFTTQSSKVFLLNAADPLSGMTLVWEGEPNVHCIIEHHQGYLYLFTNAALQGQLVDNHYLLCSPVASSCSPRNWQNVFAHDQQLIIVDVDFCNTHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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