当前解析结果
SmilChr06G003177| 统一新 Gene ID | SmilChr06G003177 |
|---|---|
| 名称 | SmilChr06G003177 |
| 描述 | uncharacterized SmilChr06G003177 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 44695945 - 44700024 / - |
| NCBI Gene ID | LOC130989887 |
|---|---|
| GeneID | 130989887 |
| locus_tag | - |
| NCBI Name | LOC130989887 |
| 原始查询 | SmilChr06G003177 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816884]; symbol=AT2G23520; hit=AT2G23520; species=arabidopsis; confidence=high |
| 产物 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816884]; symbol=AT2G23520; hit=AT2G23520; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G23520 (AT2G23520)Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816884] identity=64.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0765800 (OSJNBa0079B15.16)- identity=61.6; qcov=1.04; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989887 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057770022.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057770022.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057770022.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770022.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770022.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:44696354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,B8 |
Chr6:44696605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr6:44696606 |
CAT |
C |
2bp_deletion | frameshift_variant | 7 | A10,A19,B1,C39,C84,C87,D9 |
Chr6:44696731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B15 |
Chr6:44696759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:44696810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B18,B8,C13 |
Chr6:44696904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B108,C78 |
Chr6:44696910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C73 |
Chr6:44696950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr6:44696972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr6:44696995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C78 |
Chr6:44697069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,C30,C4,C9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。