Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003183`

染色体: Chr06 坐标: 44742369-44747243 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003183`
名称	SmilChr06G003183
描述	uncharacterized SmilChr06G003183
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44742369 - 44747243 / `+`

ID 对照

NCBI Gene ID	`LOC130989894`
GeneID	`130989894`
locus_tag	`-`
NCBI Name	`LOC130989894`
原始查询	`SmilChr06G003183`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	golgin [Source:NCBI gene (formerly Entrezgene);Acc:824207]; symbol=AT3G50430; hit=AT3G50430; species=arabidopsis; confidence=medium
产物	golgin [Source:NCBI gene (formerly Entrezgene);Acc:824207]; symbol=AT3G50430; hit=AT3G50430; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G50430` (AT3G50430) golgin [Source:NCBI gene (formerly Entrezgene);Acc:824207] identity=38; qcov=1.01; evalue=1.56e-110; confidence=medium
Rice	`Os07g0120700` - identity=30.2; qcov=1.03; evalue=6.26e-50; confidence=low
GO	-
KEGG	-
Pfam	PF14694 (LINES_N); PF14695 (LINES_C)
InterPro	-
eggNOG	-
NR	GeneID:130989894

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770031.1`
2	Nucleus membrane	核膜	0.20000	`XP_057770031.1`
3	Chromosome	染色体	0.00000	`XP_057770031.1`
4	Centromere	着丝粒	0.00000	`XP_057770031.1`
5	Chromatin	染色质	0.00000	`XP_057770031.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44742454`	`C`	`T`	EMS_canonical_SNV	stop_gained	76	A1,A10,A14,A19,A24,A7,A9,B107,B111,B117,B122,B123,B124,B127,B129,B135,B15,B18,B21,B32,B33,B35,B4,B42,B43,B45,B49,B50,B53,B55,B57,B59,B6,B60,B69,B70,B71,B72,B77,B78,B79,B8,B80,B81,B85,B87,B88,B9,B94,B97,C21,C22,C23,C27,C28,C31,C4,C45,C55,C56,C57,C58,C6,C62,C67,C71,C72,C77,C8,C80,C83,C84,C87,D2,D5,D9
`Chr6:44742456`	`A`	`ATT`	2bp_insertion	frameshift_variant	62	A1,A24,A7,A9,B107,B111,B117,B122,B124,B127,B129,B135,B15,B18,B21,B32,B33,B35,B42,B43,B45,B49,B50,B53,B55,B57,B59,B6,B60,B69,B70,B71,B77,B78,B79,B8,B80,B81,B85,B88,B9,B94,B97,C21,C22,C23,C27,C28,C31,C4,C45,C57,C58,C6,C62,C67,C72,C77,C8,C80,C83,C84
`Chr6:44742460`	`C`	`CA`	1bp_insertion	frameshift_variant	81	A11,A16,A7,A8,A9,B102,B103,B105,B106,B108,B109,B11,B115,B119,B121,B125,B128,B130,B134,B140,B18,B20,B25,B3,B30,B34,B36,B4,B41,B44,B46,B47,B49,B56,B58,B62,B63,B64,B65,B7,B73,B76,B77,B87,B96,B99,C1,C11,C15,C17,C19,C2,C20,C22,C25,C26,C27,C30,C31,C32,C33,C35,C4,C46,C49,C50,C51,C54,C55,C57,C61,C66,C69,C72,C75,C82,C83,C84,C86,D7,D9
`Chr6:44742477`	`C`	`CT`	1bp_insertion	frameshift_variant	44	A1,A10,A14,A19,A7,A9,B107,B111,B117,B122,B123,B129,B135,B15,B18,B4,B42,B43,B52,B6,B60,B69,B71,B72,B8,B85,B87,B88,B97,C22,C28,C4,C55,C56,C58,C62,C67,C71,C72,C80,C84,C87,D2,D5
`Chr6:44742481`	`T`	`TC`	1bp_insertion	frameshift_variant	21	B135,B15,B21,B32,B45,B50,B55,B57,B59,B71,B77,B81,B85,B9,B94,C21,C23,C31,C57,C6,C83
`Chr6:44742482`	`TCG`	`T`	2bp_deletion	frameshift_variant	17	A24,B111,B117,B127,B33,B35,B49,B53,B70,B78,B79,B80,C21,C27,C45,C77,C8
`Chr6:44742545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C41
`Chr6:44742549`	`CAA`	`C`	2bp_deletion	frameshift_variant	2	B54,C5
`Chr6:44742549`	`CAA`	`C`	2bp_deletion	CDS_variant	2	B54,C5
`Chr6:44742584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,B7
`Chr6:44742973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr6:44743321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B42,B43,B71,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770031.1

724 aa

362

724

LINES_N

LINES_C

PF14694 LINES_N 484-616 aa PF14695 LINES_C 685-719 aa

XP_057770032.1

721 aa

360

721

LINES_N

LINES_C

PF14694 LINES_N 481-613 aa PF14695 LINES_C 682-716 aa

XP_057770033.1

588 aa

294

588

LINES_N

LINES_C

PF14694 LINES_N 348-480 aa PF14695 LINES_C 549-583 aa

XP_057770034.1

588 aa

294

588

LINES_N

LINES_C

PF14694 LINES_N 348-480 aa PF14695 LINES_C 549-583 aa

XP_057770035.1

588 aa

294

588

LINES_N

LINES_C

PF14694 LINES_N 348-480 aa PF14695 LINES_C 549-583 aa

XP_057770036.1

588 aa

294

588

LINES_N

LINES_C

PF14694 LINES_N 348-480 aa PF14695 LINES_C 549-583 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770031.1`	Pfam	`PF14694`	LINES_N	Family	484	616	2.1e-11	44.5	Lines N-terminus
`XP_057770031.1`	Pfam	`PF14695`	LINES_C	Family	685	719	1.8e-13	50.4	Lines C-terminus
`XP_057770032.1`	Pfam	`PF14694`	LINES_N	Family	481	613	2.1e-11	44.5	Lines N-terminus
`XP_057770032.1`	Pfam	`PF14695`	LINES_C	Family	682	716	1.9e-13	50.3	Lines C-terminus
`XP_057770033.1`	Pfam	`PF14694`	LINES_N	Family	348	480	1.4e-11	45.1	Lines N-terminus
`XP_057770033.1`	Pfam	`PF14695`	LINES_C	Family	549	583	1.9e-13	50.3	Lines C-terminus
`XP_057770034.1`	Pfam	`PF14694`	LINES_N	Family	348	480	1.4e-11	45.1	Lines N-terminus
`XP_057770034.1`	Pfam	`PF14695`	LINES_C	Family	549	583	1.9e-13	50.3	Lines C-terminus
`XP_057770035.1`	Pfam	`PF14694`	LINES_N	Family	348	480	1.4e-11	45.1	Lines N-terminus
`XP_057770035.1`	Pfam	`PF14695`	LINES_C	Family	549	583	1.9e-13	50.3	Lines C-terminus
`XP_057770036.1`	Pfam	`PF14694`	LINES_N	Family	348	480	1.4e-11	45.1	Lines N-terminus
`XP_057770036.1`	Pfam	`PF14695`	LINES_C	Family	549	583	1.9e-13	50.3	Lines C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057914048.1
AAATGGAAAATTAAGAAGATACTACAACTCACACTTGTCCTCTGCAACTGAAAACGATGAATCGATGAATCATAGCTTTCCGCACCAAACCCATTACAACTTGCCATTCTTTTTCGCTCCCACCTCAAAAATTTGTGAACTTGACAAACAAATCATCACGATTACGGTGGAAGACGGTTGCAAGATGAGTCCTCGGCCTGAATACCTACGTCTCCGCCGCCTCCTACACGACTCTCTTCACCGCTTTTCACATTTGCAGG...

XM_057914049.1
AGATACTACAACTCACACTTGTCCTCTGCAACTGAAAACGATGAATCGATGAATCATAGCTTTCCGCACCAAACCCATTACAACTTGCCATTCTTTTTCGCTCCCACCTCAAAAATTTGTGAACTTGACAAACAAATCATCACGATTACGGTGGAAGACGGTTGCAAGATGAGTCCTCGGCCTGAATACCTACGTCTCCGCCGCCTCCTACACGACTCTCTTCACCGCTTTTCAGATCTCACCCCCTATCCCTTGACTCA...

CDS

6 records

下载 CDS FASTA

LOC130989894
ATGAATCATAGCTTTCCGCACCAAACCCATTACAACTTGCCATTCTTTTTCGCTCCCACCTCAAAAATTTGTGAACTTGACAAACAAATCATCACGATTACGGTGGAAGACGGTTGCAAGATGAGTCCTCGGCCTGAATACCTACGTCTCCGCCGCCTCCTACACGACTCTCTTCACCGCTTTTCACATTTGCAGGATCTCACCCCCTATCCCTTGACTCAAGAAATTGAGAAAGACCTTCTAATTGCTCTTTCTCAGAT...

LOC130989894
ATGAATCATAGCTTTCCGCACCAAACCCATTACAACTTGCCATTCTTTTTCGCTCCCACCTCAAAAATTTGTGAACTTGACAAACAAATCATCACGATTACGGTGGAAGACGGTTGCAAGATGAGTCCTCGGCCTGAATACCTACGTCTCCGCCGCCTCCTACACGACTCTCTTCACCGCTTTTCAGATCTCACCCCCTATCCCTTGACTCAAGAAATTGAGAAAGACCTTCTAATTGCTCTTTCTCAGATTTTCAGACA...

Protein

6 records

下载 Protein FASTA

XP_057770031.1
MNHSFPHQTHYNLPFFFAPTSKICELDKQIITITVEDGCKMSPRPEYLRLRRLLHDSLHRFSHLQDLTPYPLTQEIEKDLLIALSQIFRQVKQLIDEVDSDEEELLEDTACEGECLIDATAQLDNRHCLVTIIGDLMFLLAVNSQHAQHLVGNTLVAISEFLLASDGDWNDFMQLLCLCLDLSICNVLKSPSISALETRYLDFNTSTRSSLKLKLKTANWSAVAAISRVIRNIQKCLKQDFDEKYVKTYLDSVSSLLINL...

XP_057770032.1
MNHSFPHQTHYNLPFFFAPTSKICELDKQIITITVEDGCKMSPRPEYLRLRRLLHDSLHRFSDLTPYPLTQEIEKDLLIALSQIFRQVKQLIDEVDSDEEELLEDTACEGECLIDATAQLDNRHCLVTIIGDLMFLLAVNSQHAQHLVGNTLVAISEFLLASDGDWNDFMQLLCLCLDLSICNVLKSPSISALETRYLDFNTSTRSSLKLKLKTANWSAVAAISRVIRNIQKCLKQDFDEKYVKTYLDSVSSLLINLPWD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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