当前解析结果
SmilChr06G003189| 统一新 Gene ID | SmilChr06G003189 |
|---|---|
| 名称 | SmilChr06G003189 |
| 描述 | uncharacterized SmilChr06G003189 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 44787129 - 44791815 / - |
| NCBI Gene ID | LOC130989901 |
|---|---|
| GeneID | 130989901 |
| locus_tag | - |
| NCBI Name | LOC130989901 |
| 原始查询 | SmilChr06G003189 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816348]; symbol=AT2G18330; hit=AT2G18330; species=arabidopsis; confidence=high |
| 产物 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816348]; symbol=AT2G18330; hit=AT2G18330; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G18330 (AT2G18330)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816348] identity=74.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0706500 (P0680A05.31-1)- identity=66.4; qcov=0.959; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005739 (mitochondrion); GO:0007005 (mitochondrion organization); GO:0008270 (zinc ion binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF12037 (ATAD3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989901 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057770042.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057770042.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057770042.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057770042.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057770042.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:44787370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B18 |
Chr6:44787437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr6:44787449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C31 |
Chr6:44787514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr6:44787631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,C41 |
Chr6:44787667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C86 |
Chr6:44787695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:44788548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B108,D10 |
Chr6:44788699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,C41 |
Chr6:44788723 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C9 |
Chr6:44788723 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C9 |
Chr6:44788738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770042.1PF12037
ATAD3_N 57-321 aa
PF00004
AAA 391-518 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770042.1 |
Pfam | PF12037 |
ATAD3_N | Domain | 57 | 321 | 1.8e-105 | 352.8 | ATPase family AAA domain-containing protein 3, N-terminal |
XP_057770042.1 |
Pfam | PF00004 |
AAA | Domain | 391 | 518 | 1.5e-27 | 97.3 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。