Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003219`

染色体: Chr06 坐标: 44954811-44958764 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003219`
名称	SmilChr06G003219
描述	uncharacterized SmilChr06G003219
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44954811 - 44958764 / `-`

ID 对照

NCBI Gene ID	`LOC130989916`
GeneID	`130989916`
locus_tag	`-`
NCBI Name	`LOC130989916`
原始查询	`SmilChr06G003219`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
产物	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G31150` (AT1G31150) K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=20.7; qcov=0.738; evalue=7.24e-11; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:130989916

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770063.1`
2	Cytoplasm	细胞质	0.20000	`XP_057770063.1`
3	Chromosome	染色体	0.00000	`XP_057770063.1`
4	Centromere	着丝粒	0.00000	`XP_057770063.1`
5	Chromatin	染色质	0.00000	`XP_057770063.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44954998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B75,C45,C69
`Chr6:44955168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C6
`Chr6:44955201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,C83
`Chr6:44955235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr6:44955395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770063.1

588 aa

294

588

DUF8566

DUF1985

PF29561 DUF8566 59-237 aa PF09331 DUF1985 82-216 aa

XP_057770064.1

588 aa

294

588

DUF8566

DUF1985

PF29561 DUF8566 59-237 aa PF09331 DUF1985 82-216 aa

XP_057770065.1

557 aa

278

557

DUF8566

DUF1985

PF29561 DUF8566 28-206 aa PF09331 DUF1985 51-185 aa

XP_057770066.1

557 aa

278

557

DUF8566

DUF1985

PF29561 DUF8566 28-206 aa PF09331 DUF1985 51-185 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770063.1`	Pfam	`PF29561`	DUF8566	Domain	59	237	5.5e-08	33.6	Domain of unknown function (DUF8566)
`XP_057770063.1`	Pfam	`PF09331`	DUF1985	Family	82	216	7.3e-14	52.6	Domain of unknown function (DUF1985)
`XP_057770064.1`	Pfam	`PF29561`	DUF8566	Domain	59	237	5.5e-08	33.6	Domain of unknown function (DUF8566)
`XP_057770064.1`	Pfam	`PF09331`	DUF1985	Family	82	216	7.3e-14	52.6	Domain of unknown function (DUF1985)
`XP_057770065.1`	Pfam	`PF29561`	DUF8566	Domain	28	206	5.2e-08	33.6	Domain of unknown function (DUF8566)
`XP_057770065.1`	Pfam	`PF09331`	DUF1985	Family	51	185	6.7e-14	52.8	Domain of unknown function (DUF1985)
`XP_057770066.1`	Pfam	`PF29561`	DUF8566	Domain	28	206	5.2e-08	33.6	Domain of unknown function (DUF8566)
`XP_057770066.1`	Pfam	`PF09331`	DUF1985	Family	51	185	6.7e-14	52.8	Domain of unknown function (DUF1985)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057914083.1
CGAGCCATAGAGGACACGTTTCGACTGTGTATTCGTTTGAAGAAGAACGTTGGAAAAATTGTTTTGTTTTGGCTTCTTCAGAATTACTTTTCATTTGAGTGAGGATGAGTTCAAAAATTGTTTGAGAGAGGCCAGTGGACATTCTAGTATAATAGAGAAAATTTGAGTATATTAACTTTAGATTTAAAAATTAATGTAGATTAGTGATTTTATTTTACTCTCTATAGATTTGTTATTTTTTTTATAATTTTTAGTAATTT...

XM_057914081.1
CGAGCCATAGAGGACACGTTTCGACTGTGTATTCGTTTGAAGAAGAACGTTGGAAAAATTGTTTTGTTTTGGCTTCTTCAGAATTACTTTTCATTTGAGTGAGGATGAGTTCAAAAATTGTTTGAGAGAGGCCAGTGGACATTCTAGTATAATAGAGAAAATTTGAGTATATTAACTTTAGATTTAAAAATTAATGTAGATTAGTGATTTTATTTTACTCTCTATAGATTTGTTATTTTTTTTATAATTTTTAGTAATTT...

CDS

4 records

下载 CDS FASTA

LOC130989916
ATGGCTTATTGTTCTTCATCAACACAGGTATTGTATAGGAAAGGCGGTCAAGCGTTGGTAGATAGATTTTTAGGTGGTTGTTTTGGACACTTATTAGATTGGAATCCGGGGGCAAAGTGTGGTATGGCTCTTCACCATGTTGTTTCGCGCCAAATCCAGTCAAATGATAATGGATTGTGGTTTTACATTAACGGGAGCAAGTTACACTTCTCGGAGATGCATTATGCTCTTGTAACAGGGTTGAATTTCGGACAAAGTGA...

Protein

4 records

下载 Protein FASTA

XP_057770063.1
MAYCSSSTQDDPIYLRPSTINVTSHVGTYYRTKYLKLVKKVLYRKGGQALVDRFLGGCFGHLLDWNPGAKCGMALHHVVSRQIQSNDNGLWFYINGSKLHFSEMHYALVTGLNFGQSDFDVRAEHDLRNVEVFIKICCGRRTLNVDNVIDIFENYDLIGDPDGSLLLRVAHVIVLYGMLLGYERDKKVADWVWALVDHVDAFNQFPWGAYTYQILCQYAYNCSTNNQYKLYGPVWALHVWSLEIIPELGSTVGTYVEGCA...

XP_057770064.1
MAYCSSSTQDDPIYLRPSTINVTSHVGTYYRTKYLKLVKKVLYRKGGQALVDRFLGGCFGHLLDWNPGAKCGMALHHVVSRQIQSNDNGLWFYINGSKLHFSEMHYALVTGLNFGQSDFDVRAEHDLRNVEVFIKICCGRRTLNVDNVIDIFENYDLIGDPDGSLLLRVAHVIVLYGMLLGYERDKKVADWVWALVDHVDAFNQFPWGAYTYQILCQYAYNCSTNNQYKLYGPVWALHVWSLEIIPELGSTVGTYVEGCA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器