Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003222`

染色体: Chr06 坐标: 44987519-44992953 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003222`
名称	SmilChr06G003222
描述	SAL1 phosphatase
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44987519 - 44992953 / `-`

ID 对照

NCBI Gene ID	`LOC130989932`
GeneID	`130989932`
locus_tag	`-`
NCBI Name	`LOC130989932`
原始查询	`SmilChr06G003222`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SAL1 phosphatase
产物	SAL1 phosphatase
Arabidopsis	`AT5G63980` (SAL1) SAL1 phosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836519] identity=74.5; qcov=1.01; evalue=8.81e-163; confidence=high
Rice	`Os12g0183200` - identity=56; qcov=0.98; evalue=1.04e-108; confidence=high
GO	GO:0000103 (sulfate assimilation); GO:0008441 (3'(2'),5'-bisphosphate nucleotidase activity); GO:0046854 (phosphatidylinositol phosphate biosynthetic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage))
Pfam	PF00459 (Inositol_P)
InterPro	-
eggNOG	-
NR	GeneID:130989932

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057770089.1`
2	Cytosol	细胞质基质	1.00000	`XP_057770089.1`
3	Chloroplast	叶绿体	0.60000	`XP_057770088.1`
4	Nucleus	细胞核	0.20000	`XP_057770089.1`
5	Chromosome	染色体	0.00000	`XP_057770089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44989064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,D4
`Chr6:44989089`	`GGA`	`G`	2bp_deletion	frameshift_variant	1	C46
`Chr6:44989089`	`GGA`	`G`	2bp_deletion	CDS_variant	1	C46
`Chr6:44989137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,D10
`Chr6:44989194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B26,B46,B76,C81
`Chr6:44990320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr6:44991063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770088.1

405 aa

202

405

Inositol_P

PF00459 Inositol_P 94-398 aa

XP_057770089.1

304 aa

152

304

Inositol_P

PF00459 Inositol_P 5-297 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770088.1`	Pfam	`PF00459`	Inositol_P	Family	94	398	3.2e-46	158.7	Inositol monophosphatase family
`XP_057770089.1`	Pfam	`PF00459`	Inositol_P	Family	5	297	5.3e-44	151.4	Inositol monophosphatase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009090801.1
AAACTTATCGAAAATCCTGATATACTTTAAGTTCGATATTTTTCGGTACTGAAAATATTGATATACCTTAAATTTGATATTTTAACCTCCTACGATTAGGTCAACACACGCTAGTGTCCCAATCGACATTTCGAATCGTTAATCTTTCACATTGTGTCTCTATCACTTGTAAGTTAAAAAGGAAAAGAAAAAGGGGAGTCTGAGAGAGAGAGATGAACGTATCAATTGGGCATAGTAGCGCGGCATCATTATCAATGACG...

XR_009090800.1
AAACTTATCGAAAATCCTGATATACTTTAAGTTCGATATTTTTCGGTACTGAAAATATTGATATACCTTAAATTTGATATTTTAACCTCCTACGATTAGGTCAACACACGCTAGTGTCCCAATCGACATTTCGAATCGTTAATCTTTCACATTGTGTCTCTATCACTTGTAAGTTAAAAAGGAAAAGAAAAAGGGGAGTCTGAGAGAGAGAGATGAACGTATCAATTGGGCATAGTAGCGCGGCATCATTATCAATGACG...

CDS

2 records

下载 CDS FASTA

LOC130989932
ATGAACGTATCAATTGGGCATAGTAGCGCGGCATCATTATCAATGACGCGAGGAGCAGTCCTGCATATAAATGCCACAACACCCCTTCGTTCCAAATCGAAGTTCCCATTTCTCTTCTCACTCTCCTTTTCCACTACTACTTCGCGCGCAACAAGAGCCACTGCTTCAATGTCTTACCACAAGCAGCTGGCCGCCGCCAAGAAAGCCGCATCTGTAGCTGCTCGGTTATGTCAGAAGGTGCAAAAGGCTTTGTTGCAATC...

LOC130989932
ATGTCAGGTTCGCAGGCTATTGTTAGCTTTATTTTGGAGAAAGAGTTGACATCTATTCCATTTTCATTAGTAGCTGAAGAGGACTCTGGAGACCTTAGGAAAGAAGAATCCAGAGAAACGCTGCATCGCATAACAGAGCTTGTAAATGACACATTTGCTAGTGATGGAACGATTGGTATATCACCAGTCTCTGAGGAAGATGTGCTCAAAGCCATTGACACTGGAAAATCTGAAGGGGGTCCTCATGGTCAGCATTGGGT...

Protein

2 records

下载 Protein FASTA

XP_057770088.1
MNVSIGHSSAASLSMTRGAVLHINATTPLRSKSKFPFLFSLSFSTTTSRATRATASMSYHKQLAAAKKAASVAARLCQKVQKALLQSDFQSKSDKSPVTVADYGSQAIVSFILEKELTSIPFSLVAEEDSGDLRKEESRETLHRITELVNDTFASDGTIGISPVSEEDVLKAIDTGKSEGGPHGQHWVLDPIDGTKGFLRGEQYAIALALLDEGKVVLGVLACPNLPLSSIARSNLSSSEDKAGCLFFAEVGAGTYMQSL...

XP_057770089.1
MSGSQAIVSFILEKELTSIPFSLVAEEDSGDLRKEESRETLHRITELVNDTFASDGTIGISPVSEEDVLKAIDTGKSEGGPHGQHWVLDPIDGTKGFLRGEQYAIALALLDEGKVVLGVLACPNLPLSSIARSNLSSSEDKAGCLFFAEVGAGTYMQSLDGSPPTKVHVSSNENPEEASFFESYEAAHSSHDLSGLIATKLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPRRGYIEKIWDHAAGYIVVAEAGGVVNDAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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