Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003228

染色体: Chr06 坐标: 45017852-45024547 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003228
名称SmilChr06G003228
描述uncharacterized SmilChr06G003228
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向45017852 - 45024547 / -

ID 对照

NCBI Gene IDLOC130989937
GeneID130989937
locus_tag-
NCBI NameLOC130989937
原始查询SmilChr06G003228

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述SWIM zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:842351]; symbol=AT1G60560; hit=AT1G60560; species=arabidopsis; confidence=high
产物SWIM zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:842351]; symbol=AT1G60560; hit=AT1G60560; species=arabidopsis; confidence=high
ArabidopsisAT1G60560 (AT1G60560)
SWIM zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:842351]
identity=70.9; qcov=0.928; evalue=0; confidence=high
RiceOs09g0309100
-
identity=64.7; qcov=0.934; evalue=0; confidence=high
GOGO:0008270 (zinc ion binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130989937

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057770095.1
2 Chromosome 染色体 0.20000 XP_057770095.1
3 Telomere 端粒 0.20000 XP_057770095.1
4 Nucleoplasm 核质 0.20000 XP_057770097.1
5 Centromere 着丝粒 0.00000 XP_057770097.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:45018574 C T EMS_canonical_SNV CDS_variant 1 C48
Chr6:45018614 C T EMS_canonical_SNV CDS_variant 1 C6
Chr6:45018825 G A EMS_canonical_SNV CDS_variant 1 D10
Chr6:45018869 C T EMS_canonical_SNV CDS_variant 1 B104
Chr6:45019122 C T EMS_canonical_SNV CDS_variant 4 B10,B3,C72,D9
Chr6:45019478 C T EMS_canonical_SNV CDS_variant 1 B42
Chr6:45019740 G A EMS_canonical_SNV CDS_variant 1 B2
Chr6:45021478 G A EMS_canonical_SNV CDS_variant 1 D10
Chr6:45021583 C T EMS_canonical_SNV CDS_variant 1 C39
Chr6:45022061 G A EMS_canonical_SNV CDS_variant 1 B134
Chr6:45022171 C T EMS_canonical_SNV CDS_variant 2 C13,C30
Chr6:45022179 G A EMS_canonical_SNV CDS_variant 2 B56,B96

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XR_009090802.1
GAAAAGGAAAAATGAGAAAGGTTTCTGCTTGAAAGATCCTTCACCCCCTCAAAAACCCCTTCAAAATTTTCAGCCCTTCAACAAAAACCCTCTCTTTCTCTCACACGCACACAAGCACACACGCACACACGTACACACACTGGTATGAGTGTTATTTACCATGGAGCAGCTTTATGCGCAGTGAATGCTGCCCGTTGCTTAATCACACAATTTTAGAAGTTGAAGGGTTAAACTGAAGCAGATGGATGTAATTGAATCTA...
XM_057914113.1
AAGAGTGGTCGCAGTTTGTTGTTTTCTTGTTATGCTTTGCTCACCGTGCTCTCGTATTTCGTCTATTCTGGAGTTGTGTGATGATCAGCCCTTATGTTCGAATTTTCGCCTTACGGTGAAGTTTTCTGACAGTTTGCTGTTATGCGCAGTGAATGCTGCCCGTTGCTTAATCACACAATTTTAGAAGTTGAAGGGTTAAACTGAAGCAGATGGATGTAATTGAATCTATTGATAATCTCCCAGTGCAAGATCCCCCTGGA...

CDS

4 records

下载 CDS FASTA
LOC130989937
ATGGATGTAATTGAATCTATTGATAATCTCCCAGTGCAAGATCCCCCTGGAGAAGATTTCTGTTCAGCTAATTTGGATTGGTTCAAGCTTAGAAGTGCAGAGCGATGTGATGATGTTGCTCTTATACCATATGATCGGGTTGATGCCTTCATAATTGGAGAATGTTCTAATGTCGAGTGCCCAACCAGGTTCCACATCGAGAGGGGCCGGAAACGATCCAAAGGAACCTTAAAGGAATACAAGAATGATGAGTATTTGGA...
LOC130989937
ATGGATGTAATTGAATCTATTGATAATCTCCCAGTGCAAGATCCCCCTGGAGAAGATTTCTGTTCAGCTAATTTGGATTGGTTCAAGCTTAGAAGTGCAGAGCGATGTGATGATGTTGCTCTTATACCATATGATCGGGTTGATGCCTTCATAATTGGAGAATGTTCTAATGTCGAGTGCCCAACCAGGTTCCACATCGAGAGGGGCCGGAAACGATCCAAAGGAACCTTAAAGGAATACAAGAATGATGAGTATTTGGA...

Protein

4 records

下载 Protein FASTA
XP_057770095.1
MDVIESIDNLPVQDPPGEDFCSANLDWFKLRSAERCDDVALIPYDRVDAFIIGECSNVECPTRFHIERGRKRSKGTLKEYKNDEYLEYRLYWCSFGPENYGEGGGTLPSRRYRLNTRNRAARPQSMRGCTCNFVVKRLYARPSLVLLIYNERRHVNKAGFVCHGPLDKDAIGPGAKKIPYVCSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDPKVQTLASQYVQKLGMIIKRSTHELDLDDEASIRLWAERNKKS...
XP_057770096.1
MDVIESIDNLPVQDPPGEDFCSANLDWFKLRSAERCDDVALIPYDRVDAFIIGECSNVECPTRFHIERGRKRSKGTLKEYKNDEYLEYRLYWCSFGPENYGEGGGTLPSRRYRLNTRNRAARPQSMRGCTCNFVVKRLYARPSLVLLIYNERRHVNKAGFVCHGPLDKDAIGPGAKKIPYVCSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDPKVQTLASQYVQKLGMIIKRSTHELDLDDEASIRLWAERNKKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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