当前解析结果
SmilChr06G003230| 统一新 Gene ID | SmilChr06G003230 |
|---|---|
| 名称 | SmilChr06G003230 |
| 描述 | uncharacterized SmilChr06G003230 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45027826 - 45030669 / - |
| NCBI Gene ID | LOC130989938 |
|---|---|
| GeneID | 130989938 |
| locus_tag | - |
| NCBI Name | LOC130989938 |
| 原始查询 | SmilChr06G003230 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838484]; symbol=AT1G19025; hit=AT1G19025; species=arabidopsis; confidence=high |
| 产物 | DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838484]; symbol=AT1G19025; hit=AT1G19025; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19025 (AT1G19025)DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838484] identity=47.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0881400- identity=54.5; qcov=0.747; evalue=7.41e-158; confidence=high |
| GO | GO:0003684 (damaged DNA binding); GO:0006303 (double-strand break repair via nonhomologous end joining); GO:0031848 (protection from non-homologous end joining at telomere); GO:0035312 (5'-3' DNA exonuclease activity); GO:0036297 (interstrand cross-link repair) |
| KEGG | - |
| Pfam | PF07522 (DRMBL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989938 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770099.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770099.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770099.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770099.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770099.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45028079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr6:45028121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B17,B95,C17,C87 |
Chr6:45028131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr6:45028156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B135,B22,B84,B97,C33 |
Chr6:45028206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr6:45028286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr6:45028309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:45028778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B23,B80,C29,D11 |
Chr6:45029020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr6:45029080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B41,B74,C80,D2 |
Chr6:45029194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:45029657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B22,B84,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770099.1PF07522
DRMBL 224-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770099.1 |
Pfam | PF07522 |
DRMBL | Domain | 224 | 335 | 5.4e-19 | 69.1 | DNA repair metallo-beta-lactamase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。