当前解析结果
SmilChr06G003246| 统一新 Gene ID | SmilChr06G003246 |
|---|---|
| 名称 | SmilChr06G003246 |
| 描述 | methylesterase 10-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45150103 - 45152154 / + |
| NCBI Gene ID | LOC130989958 |
|---|---|
| GeneID | 130989958 |
| locus_tag | - |
| NCBI Name | LOC130989958 |
| 原始查询 | SmilChr06G003246 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | methylesterase 10-like |
| 产物 | methylesterase 10-like |
| Arabidopsis | AT3G50440 (MES10)methylesterase [Source:NCBI gene (formerly Entrezgene);Acc:824208] identity=48.2; qcov=0.962; evalue=1.85e-84; confidence=high |
| Rice | Os05g0370700- identity=40.2; qcov=1.05; evalue=2.2e-62; confidence=medium |
| GO | GO:0009694 (jasmonic acid metabolic process); GO:0009696 (salicylic acid metabolic process); GO:0080030 (methyl indole-3-acetate esterase activity); GO:0080031 (methyl salicylate esterase activity); GO:0080032 (methyl jasmonate esterase activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989958 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770122.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057770122.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057770122.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770122.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770122.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45150247 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B104 |
Chr6:45150247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:45150364 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | D4 |
Chr6:45150364 |
C |
CA |
1bp_insertion | CDS_variant | 1 | D4 |
Chr6:45150489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C2 |
Chr6:45150706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B20,B40,C58 |
Chr6:45150741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,C11,C40,C69 |
Chr6:45150782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,D4 |
Chr6:45150794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C47 |
Chr6:45151865 |
GGT |
G |
2bp_deletion | frameshift_variant | 160 | A1,A10,A11,A15,A16,A18,A2,A21,A22,A24,A25,A3,A4,A5,A6,A7,B100,B102,B11,B111,B112,B113,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B13,B130,B131,B133,B136,B138,B139,B15,B16,B18,B19,B2,B20,B21,B24,B25,B26,B27,B28,B33,B36,B37,B4,B40,B41,B44,B45,B49,B50,B51,B52,B53,B55,B56,B57,B59,B6,B61,B62,B63,B64,B65,B69,B71,B72,B73,B75,B77,B78,B79,B80,B81,B84,B87,B9,B90,B91,B92,B94,B95,B96,B98,C1,C11,C13,C14,C15,C16,C19,C2,C25,C26,C28,C30,C31,C32,C33,C35,C37,C4,C40,C42,C43,C45,C46,C49,C50,C51,C52,C53,C54,C55,C56,C58,C59,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C70,C74,C75,C76,C77,C79,C80,C81,C82,C84,C85,C86,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr6:45151868 |
T |
TGC |
2bp_insertion | frameshift_variant | 158 | A1,A10,A11,A15,A16,A18,A2,A21,A22,A24,A25,A3,A4,A5,A6,A7,B100,B102,B11,B111,B112,B113,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B13,B130,B131,B133,B136,B138,B139,B15,B16,B18,B19,B2,B20,B21,B24,B25,B26,B27,B28,B33,B36,B37,B4,B40,B41,B44,B45,B49,B50,B51,B52,B53,B55,B56,B57,B59,B6,B61,B63,B64,B65,B69,B71,B72,B73,B75,B77,B78,B79,B80,B81,B84,B87,B9,B90,B91,B92,B94,B95,B96,B98,C1,C11,C13,C14,C15,C16,C19,C2,C25,C26,C28,C30,C31,C32,C33,C35,C37,C4,C40,C42,C43,C45,C46,C49,C50,C51,C52,C53,C55,C56,C58,C59,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C70,C74,C75,C76,C77,C79,C80,C81,C82,C84,C85,C86,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr6:45151869 |
G |
GCA |
2bp_insertion | frameshift_variant | 3 | B62,C49,C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770122.1PF12146
Hydrolase_4 11-132 aa
PF00561
Abhydrolase_1 11-247 aa
PF12697
Abhydrolase_6 12-245 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770122.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 11 | 132 | 1.7e-12 | 47.9 | Serine aminopeptidase, S33 |
XP_057770122.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 11 | 247 | 7.4e-22 | 78.9 | alpha/beta hydrolase fold |
XP_057770122.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 12 | 245 | 9.4e-23 | 82.7 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。