Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003255`

染色体: Chr06 坐标: 45213237-45218064 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003255`
名称	SmilChr06G003255
描述	uncharacterized SmilChr06G003255
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	45213237 - 45218064 / `+`

ID 对照

NCBI Gene ID	`LOC130989968`
GeneID	`130989968`
locus_tag	`-`
NCBI Name	`LOC130989968`
原始查询	`SmilChr06G003255`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836482]; symbol=AT5G63620; hit=AT5G63620; species=arabidopsis; confidence=high
产物	GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836482]; symbol=AT5G63620; hit=AT5G63620; species=arabidopsis; confidence=high
Arabidopsis	`AT5G63620` (AT5G63620) GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836482] identity=71.6; qcov=0.966; evalue=0; confidence=high
Rice	`Os08g0109200` - identity=72.8; qcov=0.916; evalue=0; confidence=high
GO	GO:0008270 (zinc ion binding); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF00107 (ADH_zinc_N); PF08240 (ADH_N); PF13602 (ADH_zinc_N_2)
InterPro	-
eggNOG	-
NR	GeneID:130989968

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057770136.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057770136.1`
3	Nucleus	细胞核	0.00000	`XP_057770136.1`
4	Chromosome	染色体	0.00000	`XP_057770136.1`
5	Centromere	着丝粒	0.00000	`XP_057770136.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:45213474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:45213550`	`A`	`AG`	1bp_insertion	stop_gained,frameshift_variant	2	C11,C69
`Chr6:45213550`	`A`	`AG`	1bp_insertion	CDS_variant	2	C11,C69
`Chr6:45213568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,C40,C80
`Chr6:45213602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr6:45213618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,B53,B80
`Chr6:45215387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:45216170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr6:45216643`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D5
`Chr6:45216643`	`TG`	`T`	1bp_deletion	CDS_variant	1	D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770136.1

438 aa

219

438

ADH_N

ADH_zinc_N

ADH_zinc_N_2

PF08240 ADH_N 91-226 aa PF00107 ADH_zinc_N 267-398 aa PF13602 ADH_zinc_N_2 300-435 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770136.1`	Pfam	`PF08240`	ADH_N	Domain	91	226	4.5e-23	82.2	Alcohol dehydrogenase GroES-like domain
`XP_057770136.1`	Pfam	`PF00107`	ADH_zinc_N	Domain	267	398	3.2e-36	124.8	Zinc-binding dehydrogenase
`XP_057770136.1`	Pfam	`PF13602`	ADH_zinc_N_2	Domain	300	435	7.9e-16	59.9	Zinc-binding dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914153.1
AGACGGGAGGGAGTAGTATTTTTTTAGTTTAGGATGGATAAGAAGCATTGACTGCTGCGATTCGCAATTGGCAATATTTTATGCCCAAGAAAATTAAATTAAATGTATCATGCTATCGACAGCTATGATCATTCAGTGATTGTATTCTTCTTTGGGAAACGCTAATTCCAACTTTTTCCATCGCAATCTCCGATGGCATTTTACCGAAGCTCCCTTTTACTGCGCAAGGCCTTCGGCGGAAGCCGCCGCGCGGCCGCCGT...

CDS

1 records

下载 CDS FASTA

LOC130989968
ATGGCATTTTACCGAAGCTCCCTTTTACTGCGCAAGGCCTTCGGCGGAAGCCGCCGCGCGGCCGCCGTGAGCTTTTCGTGCAGTTCTCGGGTGGAAGGTTGCTCCGATCGCCGAAGATGGTATTCTAGCTCGGAAGCGGGCTGTGAAGGTACAACCATGAAAGCGTCGGGGTACCACGTGAGCAGCGGGCCTTCGCACATGACGGGAGCAGTCTTCTGGGAGCCGAATAAACCCATCAGTTTCGAAGATTTTGAGATGCC...

Protein

1 records

下载 Protein FASTA

XP_057770136.1
MAFYRSSLLLRKAFGGSRRAAAVSFSCSSRVEGCSDRRRWYSSSEAGCEGTTMKASGYHVSSGPSHMTGAVFWEPNKPISFEDFEMPRPKANEVLVKTKACGVCHSDLHVIKGEIPFPTPCAVGHEITGEVVEHGPLSDRKTIERFPVGSQVVGAFIMPCGNCFFCSKGQDDLCEDFFAYNRAKGTLYDGETRLFLRGSGKPVYMYSMGGLAEFCVVPAHGLTSLPSTLPYTESAILGCAVFTAYGAMAHAAQVRPGDAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器