Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003277`

染色体: Chr06 坐标: 45346931-45354017 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003277`
名称	SmilChr06G003277
描述	uncharacterized SmilChr06G003277
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	45346931 - 45354017 / `+`

ID 对照

NCBI Gene ID	`LOC130989991`
GeneID	`130989991`
locus_tag	`-`
NCBI Name	`LOC130989991`
原始查询	`SmilChr06G003277`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	U2 small nuclear ribonucleoprotein auxiliary factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836522]; symbol=AT5G64010; hit=AT5G64010; species=arabidopsis; confidence=medium
产物	U2 small nuclear ribonucleoprotein auxiliary factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836522]; symbol=AT5G64010; hit=AT5G64010; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G64010` (AT5G64010) U2 small nuclear ribonucleoprotein auxiliary factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836522] identity=40; qcov=1.02; evalue=2.65e-48; confidence=medium
Rice	`Os04g0693250` - identity=35.8; qcov=1.02; evalue=1.73e-41; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130989991

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770158.1`
2	Chromosome	染色体	0.80000	`XP_057770158.1`
3	Telomere	端粒	0.20000	`XP_057770158.1`
4	Centromere	着丝粒	0.00000	`XP_057770158.1`
5	Chromatin	染色质	0.00000	`XP_057770158.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:45347052`	`A`	`AT`	1bp_insertion	frameshift_variant	50	A13,A14,A24,A3,A5,A9,B10,B106,B107,B115,B119,B124,B139,B14,B24,B30,B31,B49,B52,B63,B65,B75,B83,B85,B9,B91,B94,C15,C16,C2,C26,C27,C3,C37,C40,C43,C44,C50,C59,C67,C71,C73,C74,C8,C81,C83,C87,D10,D5,D7
`Chr6:45347173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:45348410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B107,B24,C83
`Chr6:45352418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B93
`Chr6:45352458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B107,B24,C83
`Chr6:45352530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr6:45353697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B93,C37

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914176.1
GAAACCCGGACCGGCGGACAAAAAAAATAAACAAAAAACACTTTATTTGCATGCAACGTGTCAACATCTTAAGGGCATTTCAAGTAAAAGGGAGCTAAAGCCAAACAATCTTACAAAGAACATGACTTTTCAAGAAATGCATCCTATATTTGGAAGAGTGGTGGCGGAATCGTCAGCGCCGCCGCAGCAAACCTCGTCGCGTGTCCCGTTTCTTTATTACTTGCACCGTAGTGGAGACGACGGCTCGGTGCTCCGAGTCG...

XM_057914175.1
GTAAAAGGGAGCTAAAGCCAAACAATCTTACAAAGAACATGACTTTTCAAGAAATGCATCCTATATTTGGAAGAGTGGTGGCGGAATCGTCAGCGCCGCCGCAGCAAACCTCGTCGCGTGTCCCGTTTCTTTATTACTTGCACCGTAGTGGAGACGACGGCTCGGTGCTCCGAGTCGTCGCCACCGATTTCCAGTGCAATACATTTCAGACCATTAGGTCTCGCCAACAGCTCGAAGACTTGAAGGATGATATCGGGATT...

CDS

2 records

下载 CDS FASTA

LOC130989991
ATGACTTTTCAAGAAATGCATCCTATATTTGGAAGAGTGGTGGCGGAATCGTCAGCGCCGCCGCAGCAAACCTCGTCGCGTGTCCCGTTTCTTTATTACTTGCACCGTAGTGGAGACGACGGCTCGGTGCTCCGAGTCGTCGCCACCGATTTCCAGTGCAATACATTTCAGACCATTAGGTCTCGCCAACAGCTCGAAGACTTGAAGGATGATATCGGGATTGGTGGCTCGTGGTCTGAGTTTGTTGACTACATCACATC...

Protein

2 records

下载 Protein FASTA

XP_057770158.1
MTFQEMHPIFGRVVAESSAPPQQTSSRVPFLYYLHRSGDDGSVLRVVATDFQCNTFQTIRSRQQLEDLKDDIGIGGSWSEFVDYITSSLKSGDVKLVMDGVSELGGASQAKLISQKAKGMPRILFSLHKLVDGAANEAMANLSLELYNEFKDVQSSLAEEKGSKYHLQKVLATEQEKNVDLQKQLNMTLYSGKHKSQKINDRKDSGSTSVVISAESPADKETASDTNSRKRTTRVAPTYRRSKVRGAILNDTEDDA

XP_057770159.1
MTFQEMHPIFGRVVAESSAPPQQTSSRVPFLYYLHRSGDDGSVLRVVATDFQCNTFQTIRSRQQLEDLKDDIGIGGSWSEFVDYITSSLKSGDVKLVMDGVSELGGASQAKLISQKAKGMPRILFSLHKLVDGAANEAMANLSLELYNEFKDVQSSLAEEKGSKYHLQKVLATEQEKNVDLQKQLNMTLYSGKHKSQKINDRKDSGSTSVVISAESPDKETASDTNSRKRTTRVAPTYRRSKVRGAILNDTEDDA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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