当前解析结果
SmilChr06G003278| 统一新 Gene ID | SmilChr06G003278 |
|---|---|
| 名称 | SmilChr06G003278 |
| 描述 | uncharacterized SmilChr06G003278 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45353927 - 45355491 / - |
| NCBI Gene ID | LOC130989992 |
|---|---|
| GeneID | 130989992 |
| locus_tag | - |
| NCBI Name | LOC130989992 |
| 原始查询 | SmilChr06G003278 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | patatin-like phospholipase domain protein [Source:NCBI gene (formerly Entrezgene);Acc:844034]; symbol=AT1G76980; hit=AT1G76980; species=arabidopsis; confidence=low |
| 产物 | patatin-like phospholipase domain protein [Source:NCBI gene (formerly Entrezgene);Acc:844034]; symbol=AT1G76980; hit=AT1G76980; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G76980 (AT1G76980)patatin-like phospholipase domain protein [Source:NCBI gene (formerly Entrezgene);Acc:844034] identity=33.3; qcov=0.717; evalue=4.04e-16; confidence=low |
| Rice | Os11g0199801- identity=34.1; qcov=0.37; evalue=9.84e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057770160.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057770160.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057770160.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770160.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770160.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45354350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C37 |
Chr6:45354979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,C37 |
Chr6:45354995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C28 |
Chr6:45355096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B17,C27,C86 |
Chr6:45355140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr6:45355174 |
C |
CCT |
2bp_insertion | frameshift_variant | 1 | B117 |
Chr6:45355174 |
C |
CCT |
2bp_insertion | CDS_variant | 1 | B117 |
Chr6:45355175 |
GCA |
G |
2bp_deletion | frameshift_variant | 1 | B117 |
Chr6:45355175 |
GCA |
G |
2bp_deletion | CDS_variant | 1 | B117 |
Chr6:45355212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr6:45355279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C83 |
Chr6:45355288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,C85 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。