当前解析结果
SmilChr06G003283| 统一新 Gene ID | SmilChr06G003283 |
|---|---|
| 名称 | SmilChr06G003283 |
| 描述 | acyl-CoA--sterol O-acyltransferase 1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 45376476 - 45379542 / + |
| NCBI Gene ID | LOC130989998 |
|---|---|
| GeneID | 130989998 |
| locus_tag | - |
| NCBI Name | LOC130989998 |
| 原始查询 | SmilChr06G003283 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acyl-CoA--sterol O-acyltransferase 1-like |
| 产物 | acyl-CoA--sterol O-acyltransferase 1-like |
| Arabidopsis | AT3G51970 (ASAT1)acyl-CoA sterol acyl transferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:824360] identity=48.1; qcov=0.911; evalue=6.21e-106; confidence=high |
| Rice | Os02g0454500- identity=38.8; qcov=0.919; evalue=3.1e-74; confidence=medium |
| GO | GO:0006629 (lipid metabolic process); GO:0008374 (GO:0008374) |
| KEGG | - |
| Pfam | PF13813 (MBOAT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989998 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057770163.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057770163.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770163.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770163.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770163.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:45376824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr6:45376956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C18,C87 |
Chr6:45377242 |
CTG |
C |
2bp_deletion | frameshift_variant | 242 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B105,B107,B108,B109,B11,B110,B111,B112,B113,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr6:45377245 |
G |
GCA |
2bp_insertion | frameshift_variant | 242 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A25,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B105,B107,B108,B109,B11,B110,B111,B112,B113,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr6:45378862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr6:45378874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B79,C77 |
Chr6:45378876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B108,B70 |
Chr6:45378881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,C32,C68 |
Chr6:45378890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:45378928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C16 |
Chr6:45378979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr6:45378990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770163.1PF13813
MBOAT_2 195-281 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770163.1 |
Pfam | PF13813 |
MBOAT_2 | Family | 195 | 281 | 1.4e-16 | 61.2 | Membrane bound O-acyl transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。