Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003289`

染色体: Chr06 坐标: 45449609-45453974 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003289`
名称	SmilChr06G003289
描述	syntaxin-61-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	45449609 - 45453974 / `+`

ID 对照

NCBI Gene ID	`LOC130990004`
GeneID	`130990004`
locus_tag	`-`
NCBI Name	`LOC130990004`
原始查询	`SmilChr06G003289`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	syntaxin-61-like
产物	syntaxin-61-like
Arabidopsis	`AT1G28490` (SYP61) syntaxin of plants 61 [Source:NCBI gene (formerly Entrezgene);Acc:839749] identity=69; qcov=0.995; evalue=2.17e-93; confidence=high
Rice	`Os01g0963300` - identity=65; qcov=1.02; evalue=8.6e-79; confidence=high
GO	GO:0016020 (membrane); GO:0048193 (Golgi vesicle transport)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF05739 (SNARE); PF09177 (STX6_10_61_N)
InterPro	-
eggNOG	-
NR	GeneID:130990004

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057770168.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057770168.1`
3	Vacuole	液泡	0.80000	`XP_057770168.1`
4	Vacuole membrane	液泡膜	0.80000	`XP_057770168.1`
5	Nucleus	细胞核	0.00000	`XP_057770168.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:45449994`	`C`	`T`	EMS_canonical_SNV	stop_gained	14	A4,B22,B26,B30,B34,B44,B73,B83,C10,C19,C3,C4,C63,C79
`Chr6:45451199`	`GT`	`G`	1bp_deletion	frameshift_variant	3	B16,B4,B78
`Chr6:45451199`	`GT`	`G`	1bp_deletion	CDS_variant	3	B16,B4,B78
`Chr6:45451211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr6:45451268`	`GGA`	`G`	2bp_deletion	frameshift_variant	1	B102
`Chr6:45451268`	`GGA`	`G`	2bp_deletion	CDS_variant	1	B102
`Chr6:45451271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,C48
`Chr6:45451923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr6:45451989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C40,C74
`Chr6:45452001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr6:45452035`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	B104,B124,B131,B39,B45,C25,C82,C84,C9
`Chr6:45452045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770168.1

246 aa

123

246

STX6_10_61_N

SNARE

PF09177 STX6_10_61_N 6-99 aa PF05739 SNARE 156-233 aa

XP_057770169.1

191 aa

191

STX6_10_61_N

SNARE

PF09177 STX6_10_61_N 3-44 aa PF05739 SNARE 101-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770168.1`	Pfam	`PF09177`	STX6_10_61_N	Domain	6	99	1.2e-24	87.4	Syntaxin 6/10/61, N-terminal
`XP_057770168.1`	Pfam	`PF05739`	SNARE	Domain	156	233	1.4e-13	51.2	SNARE domain
`XP_057770169.1`	Pfam	`PF09177`	STX6_10_61_N	Domain	3	44	3.3e-08	34.7	Syntaxin 6/10/61, N-terminal
`XP_057770169.1`	Pfam	`PF05739`	SNARE	Domain	101	178	1.4e-13	51.2	SNARE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914185.1
GGCACAATATTTCCAATTAAAACATTCCGAAATTCACACAACAATCAAAGAAAAGGAAACATGAGACACATAAGTTCTTCTAGTCATGTGAGCTGAGCAATCGGAACTAGCTTAGCATTTGAGGAAACGGAGAAGCCATGCTTCATTCAGAAGCATTGAGGAAACACAACAATTAGAGCTCCCTGCTGCAGCACCGCCCTCCCACCCCAATCGAGAATCGAAATCCCAAACCGATCGGAGCTCGCCGCTGCACTGCAGAG...

XM_057914186.1
ATTGATAAGTTTCTCCAAACCTTTCACAAATGGGAACGGATGCCTTCAGATAGTGGGGAGAGGATACACCTCACTAAGGAGGTTCTTACTGGATCTGAGAGCATAGAATGGCAGATGAATTGGACAAGGCAATAACTGTTGCATCTAGGAATCCTGCTTTGTATGGTATCGATCAAGTGGAGCTTGATAATCGAAGAAGATGGACAAGCAATGCTCGGAATCAGGTGAAAAGTGTCAAGAATTCAGTTGTAACTGGAAAA...

CDS

2 records

下载 CDS FASTA

LOC130990004
ATGTCGTCAGCTCAAGACCCTTTTTACATTGTGAAAGAGGAGATTCAGGATTCTATTGATAAGTTTCTCCAAACCTTTCACAAATGGGAACGGATGCCTTCAGATAGTGGGGAGAGGATACACCTCACTAAGGAGGTTCTTACTGGATCTGAGAGCATAGAATGGCAGGTAGATGAATTGGACAAGGCAATAACTGTTGCATCTAGGAATCCTGCTTTGTATGGTATCGATCAAGTGGAGCTTGATAATCGAAGAAGATG...

LOC130990004
ATGGCAGATGAATTGGACAAGGCAATAACTGTTGCATCTAGGAATCCTGCTTTGTATGGTATCGATCAAGTGGAGCTTGATAATCGAAGAAGATGGACAAGCAATGCTCGGAATCAGGTGAAAAGTGTCAAGAATTCAGTTGTAACTGGAAAAGAGTTGAATGACACTAGCACATCTAATTTCAGTGAAATGCGCCGAGAGCTTATGAGACTGCCAAATCCTCATCATGCTGATCAATCACAAAAGTACAGTGCAGATAA...

Protein

2 records

下载 Protein FASTA

XP_057770168.1
MSSAQDPFYIVKEEIQDSIDKFLQTFHKWERMPSDSGERIHLTKEVLTGSESIEWQVDELDKAITVASRNPALYGIDQVELDNRRRWTSNARNQVKSVKNSVVTGKELNDTSTSNFSEMRRELMRLPNPHHADQSQKYSADNDDFISSESDRQLLLMRQQDEELDELSNSVQRIGGVGLTIHEELLAQEKIVDELGMEMDGTSNRLDFVQKKVGVVMKKAGAKGQIMMICFLLVLFIILFVLVFLT

XP_057770169.1
MADELDKAITVASRNPALYGIDQVELDNRRRWTSNARNQVKSVKNSVVTGKELNDTSTSNFSEMRRELMRLPNPHHADQSQKYSADNDDFISSESDRQLLLMRQQDEELDELSNSVQRIGGVGLTIHEELLAQEKIVDELGMEMDGTSNRLDFVQKKVGVVMKKAGAKGQIMMICFLLVLFIILFVLVFLT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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