Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000018`

染色体: Chr07 坐标: 84338-90639 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000018`
名称	SmilChr07G000018
描述	AAA-ATPase At3g28580-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	84338 - 90639 / `-`

ID 对照

NCBI Gene ID	`LOC130991205`
GeneID	`130991205`
locus_tag	`-`
NCBI Name	`LOC130991205`
原始查询	`SmilChr07G000018`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAA-ATPase At3g28580-like
产物	AAA-ATPase At3g28580-like
Arabidopsis	`AT3G28580` (AT3G28580) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822488] identity=51; qcov=0.929; evalue=8.62e-163; confidence=high
Rice	`Os12g0639200` - identity=48.8; qcov=0.929; evalue=6.21e-148; confidence=high
GO	GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF14363 (AAA_assoc); PF25568 (AAA_lid_At3g28540)
InterPro	-
eggNOG	-
NR	GeneID:130991205

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.40000	`XP_057771289.1`
2	Cytosol	细胞质基质	0.20000	`XP_057771289.1`
3	Mitochondrion	线粒体	0.20000	`XP_057771289.1`
4	Chloroplast	叶绿体	0.20000	`XP_057771289.1`
5	Nucleus	细胞核	0.00000	`XP_057771289.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:88382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr7:88733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:88756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr7:88767`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C5
`Chr7:88767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:88771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,A4
`Chr7:88843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B78,C58
`Chr7:88869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:88900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B17,C23,C3,C43,C56
`Chr7:88937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:89635`	`AAG`	`A`	2bp_deletion	frameshift_variant	5	B111,B125,B132,B17,B54
`Chr7:89635`	`AAG`	`A`	2bp_deletion	CDS_variant	5	B111,B125,B132,B17,B54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771289.1

490 aa

245

490

AAA_assoc

AAA

AAA_lid_At3g28540

PF14363 AAA_assoc 25-117 aa PF00004 AAA 242-391 aa PF25568 AAA_lid_At3g28540 393-463 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771289.1`	Pfam	`PF14363`	AAA_assoc	Family	25	117	5.2e-18	66.0	Domain associated at C-terminal with AAA
`XP_057771289.1`	Pfam	`PF00004`	AAA	Domain	242	391	7.2e-21	75.7	ATPase family associated with various cellular activities (AAA)
`XP_057771289.1`	Pfam	`PF25568`	AAA_lid_At3g28540	Domain	393	463	7.1e-25	87.4	At3g28540-like, AAA+ ATPase lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915306.1
AATAATATTTCAAGTAAAACAAGCATGAATTTTTGGGAATCTCTATTTGCTCGAATCGGAAGTCTGGTGTTCATATTCACCACTCTCGAAAGATTCATCCCTTCCCAATTTTGGGACACCGTAGACATATATCTCCGGAAATTGGCCTTCTTCTTCAACCCCAACGTGGAGATCACGTTCGACGAGTTCCCGCCGGAGGACTACGGGCGGAGCAAAGCCTACGCGGCCATACAGGCGTACCTGGGCACGAATTTCTCCGG...

CDS

1 records

下载 CDS FASTA

LOC130991205
ATGAATTTTTGGGAATCTCTATTTGCTCGAATCGGAAGTCTGGTGTTCATATTCACCACTCTCGAAAGATTCATCCCTTCCCAATTTTGGGACACCGTAGACATATATCTCCGGAAATTGGCCTTCTTCTTCAACCCCAACGTGGAGATCACGTTCGACGAGTTCCCGCCGGAGGACTACGGGCGGAGCAAAGCCTACGCGGCCATACAGGCGTACCTGGGCACGAATTTCTCCGGGCAGACGGCCCGGCTCAAGGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057771289.1
MNFWESLFARIGSLVFIFTTLERFIPSQFWDTVDIYLRKLAFFFNPNVEITFDEFPPEDYGRSKAYAAIQAYLGTNFSGQTARLKATAAGKGRGVTLSMDDCQEIAEVYKGVKVCWMRSTKYPRNNVISFKESVDEKRAYILSFRQKDRNVVVGSYLTHVLGEGKAISKRGRKQRLYTNVSGDDWGSDDKMMWRSVGFEHPATFETLAMDPKKKKEIMDDLIEFTKARDYYAKIGKPWKRGYLLYGPPGTGKSTMIAAIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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