当前解析结果
SmilChr07G000026| 统一新 Gene ID | SmilChr07G000026 |
|---|---|
| 名称 | SmilChr07G000026 |
| 描述 | probable serine/threonine-protein kinase PBL9 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 116617 - 119234 / - |
| NCBI Gene ID | LOC130991217 |
|---|---|
| GeneID | 130991217 |
| locus_tag | - |
| NCBI Name | LOC130991217 |
| 原始查询 | SmilChr07G000026 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase PBL9 |
| 产物 | probable serine/threonine-protein kinase PBL9 |
| Arabidopsis | AT2G28930 (PK1B)protein kinase 1B [Source:NCBI gene (formerly Entrezgene);Acc:817442] identity=56; qcov=0.784; evalue=7.52e-132; confidence=high |
| Rice | Os03g0274800 (OsRLCK107)- identity=51.4; qcov=0.94; evalue=5.08e-132; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991217 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771303.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057771303.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771303.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771303.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771303.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:116953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:116967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B131,B35,B50,B94,C52 |
Chr7:117062 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B35 |
Chr7:117062 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B35 |
Chr7:117067 |
GT |
G |
1bp_deletion | frameshift_variant | 50 | A1,A10,A11,A13,A14,A18,A5,B110,B112,B114,B115,B117,B126,B17,B27,B30,B34,B37,B41,B45,B51,B57,B59,B61,B64,B68,B69,B72,B90,B91,B92,C10,C14,C17,C18,C19,C22,C25,C34,C35,C37,C38,C39,C42,C45,C57,C79,C83,C86,D7 |
Chr7:117069 |
CTT |
C |
2bp_deletion | frameshift_variant | 50 | A1,A10,A11,A13,A14,A18,A5,B110,B112,B114,B115,B117,B126,B17,B27,B30,B34,B37,B41,B45,B51,B57,B59,B61,B64,B68,B69,B72,B90,B91,B92,C10,C14,C17,C18,C19,C22,C25,C34,C35,C37,C38,C39,C42,C45,C57,C79,C83,C86,D7 |
Chr7:117100 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B12,C82 |
Chr7:117100 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B12,C82 |
Chr7:117111 |
C |
CAG |
2bp_insertion | frameshift_variant | 3 | B23,B78,C58 |
Chr7:117111 |
C |
CAG |
2bp_insertion | CDS_variant | 3 | B23,B78,C58 |
Chr7:117112 |
CCG |
C |
2bp_deletion | frameshift_variant | 3 | B23,B78,C58 |
Chr7:117112 |
CCG |
C |
2bp_deletion | CDS_variant | 3 | B23,B78,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771303.1PF00069
Pkinase 107-380 aa
PF07714
PK_Tyr_Ser-Thr 108-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771303.1 |
Pfam | PF00069 |
Pkinase | Domain | 107 | 380 | 1.5e-37 | 130.2 | Protein kinase domain |
XP_057771303.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 108 | 382 | 5.9e-41 | 141.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。