当前解析结果
SmilChr07G000027| 统一新 Gene ID | SmilChr07G000027 |
|---|---|
| 名称 | SmilChr07G000027 |
| 描述 | receptor-like cytoplasmic kinase 176 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 120289 - 122627 / - |
| NCBI Gene ID | LOC130991216 |
|---|---|
| GeneID | 130991216 |
| locus_tag | - |
| NCBI Name | LOC130991216 |
| 原始查询 | SmilChr07G000027 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like cytoplasmic kinase 176 |
| 产物 | receptor-like cytoplasmic kinase 176 |
| Arabidopsis | AT2G02800 (APK2B)protein kinase 2B [Source:NCBI gene (formerly Entrezgene);Acc:814810] identity=59; qcov=0.777; evalue=5.02e-132; confidence=high |
| Rice | Os05g0110900 (OsRLCK176)- identity=55.2; qcov=0.816; evalue=7.16e-133; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991216 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771301.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057771301.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771301.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771301.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:120362 |
C |
CT |
1bp_insertion | frameshift_variant | 4 | A15,B106,B36,C87 |
Chr7:120362 |
C |
CT |
1bp_insertion | CDS_variant | 4 | A15,B106,B36,C87 |
Chr7:120384 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B2,B80,C55,C62 |
Chr7:120384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B80,C55,C62 |
Chr7:120486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr7:120528 |
T |
TTC |
2bp_insertion | frameshift_variant | 116 | A15,A22,A23,A5,A6,A7,A8,A9,B1,B101,B106,B108,B109,B11,B113,B114,B117,B118,B119,B12,B121,B122,B124,B127,B13,B130,B132,B134,B136,B138,B140,B16,B2,B23,B24,B27,B28,B3,B30,B33,B35,B36,B37,B42,B43,B51,B53,B57,B58,B6,B61,B62,B64,B65,B67,B7,B70,B71,B74,B78,B79,B8,B80,B88,B95,B99,C1,C12,C13,C14,C15,C2,C20,C21,C24,C28,C29,C3,C31,C32,C33,C4,C40,C41,C44,C45,C46,C47,C48,C49,C51,C54,C55,C58,C59,C6,C62,C64,C66,C67,C68,C7,C71,C74,C75,C76,C78,C8,C82,C84,C85,C87,D11,D5,D6,D9 |
Chr7:120551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B106,B121,B36,C87 |
Chr7:120598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B78 |
Chr7:120780 |
T |
TG |
1bp_insertion | frameshift_variant | 6 | A15,B25,C36,C59,C72,C75 |
Chr7:120781 |
G |
GT |
1bp_insertion | frameshift_variant | 127 | A1,A11,A14,A20,A22,A24,A3,A4,A5,A6,A7,A9,B10,B103,B104,B105,B11,B110,B111,B112,B113,B115,B119,B12,B121,B123,B124,B126,B130,B133,B136,B138,B139,B140,B17,B18,B19,B22,B26,B29,B3,B30,B35,B36,B38,B39,B44,B47,B48,B5,B50,B52,B53,B54,B55,B56,B59,B64,B65,B66,B7,B75,B77,B78,B8,B80,B83,B87,B88,B91,B92,B94,B95,B96,B98,C12,C13,C14,C15,C16,C17,C18,C19,C2,C21,C22,C26,C27,C29,C3,C31,C33,C35,C38,C40,C43,C44,C45,C46,C48,C49,C53,C56,C57,C58,C59,C6,C60,C61,C63,C64,C69,C7,C70,C73,C74,C77,C79,C80,C82,C84,D1,D4,D5,D7,D8,D9 |
Chr7:120784 |
AT |
A |
1bp_deletion | frameshift_variant | 137 | A1,A11,A14,A15,A20,A22,A24,A3,A4,A5,A6,A7,A9,B10,B102,B103,B104,B105,B11,B110,B111,B112,B113,B115,B119,B12,B123,B124,B126,B130,B133,B136,B138,B139,B140,B17,B18,B19,B22,B25,B26,B29,B3,B30,B35,B38,B39,B44,B47,B48,B5,B50,B52,B53,B54,B55,B56,B59,B64,B65,B66,B7,B71,B73,B75,B76,B77,B78,B8,B80,B83,B87,B88,B91,B92,B94,B95,B96,B98,C12,C13,C14,C15,C16,C17,C18,C19,C2,C21,C22,C24,C26,C27,C29,C3,C31,C33,C35,C36,C38,C40,C43,C44,C45,C46,C48,C49,C53,C56,C57,C58,C59,C6,C60,C61,C63,C64,C67,C69,C7,C70,C72,C73,C74,C75,C77,C79,C80,C82,C84,C86,D1,D4,D5,D7,D8,D9 |
Chr7:120798 |
AGC |
A |
2bp_deletion | frameshift_variant | 3 | B49,C68,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771301.1PF00069
Pkinase 133-406 aa
PF07714
PK_Tyr_Ser-Thr 133-408 aa
XP_057771302.1PF00069
Pkinase 107-380 aa
PF07714
PK_Tyr_Ser-Thr 107-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771301.1 |
Pfam | PF00069 |
Pkinase | Domain | 133 | 406 | 2.7e-37 | 129.3 | Protein kinase domain |
XP_057771301.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 133 | 408 | 1.3e-44 | 153.1 | Protein tyrosine and serine/threonine kinase |
XP_057771302.1 |
Pfam | PF00069 |
Pkinase | Domain | 107 | 380 | 2.2e-37 | 129.6 | Protein kinase domain |
XP_057771302.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 107 | 382 | 1.1e-44 | 153.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。